PET-Train: Automatic Ground Truth Generation from PET Acquisitions for Urinary Bladder Segmentation in CT Images using Deep Learning

Christina Gsaxner, Birgit Pfarrkirchner, Lydia Lindner, Antonio Pepe, Peter M. Roth, Jürgen Wallner, Jan Egger

Research output: Contribution to conferencePaperResearchpeer-review

Abstract

In this contribution, we propose an automatic ground truth generation approach that utilizes Positron Emission Tomography (PET) acquisitions to train neural networks for automatic urinary bladder segmentation in Computed Tomography (CT) images. We evaluated different deep learning architectures to segment the urinary bladder. However, deep neural networks require a large amount of training data, which is currently the main bottleneck in the medical field, because ground truth labels have to be created by medical experts on a time-consuming slice-by-slice basis. To overcome this problem, we generate the training data set from the PET data of combined PET/CT acquisitions. This can be achieved by applying simple thresholding to the PET data, where the radiotracer accumulates very distinct in the urinary bladder. However, the ultimate goal is to entirely skip PET imaging and its additional radiation exposure in the future, and only use CT images for segmentation.

LanguageEnglish
DOIs
StatusPublished - 2019
EventIEEE Biomedical Engineering International Conference - Chiang Mai, Thailand
Duration: 21 Nov 2018 → …
Conference number: 11

Conference

ConferenceIEEE Biomedical Engineering International Conference
Abbreviated titleBMEiCON
CountryThailand
CityChiang Mai
Period21/11/18 → …

Fingerprint

Positron emission tomography
ground truth
bladder
learning
Tomography
positrons
acquisition
tomography
education
Labels
Deep learning
radiation dosage
Neural networks
Imaging techniques
Radiation

Keywords

  • Deep Learning
  • Medical Imaging
  • PET/CT
  • Segmentation
  • Urinary Bladder

ASJC Scopus subject areas

  • Artificial Intelligence
  • Instrumentation
  • Biomedical Engineering

Cite this

Gsaxner, C., Pfarrkirchner, B., Lindner, L., Pepe, A., Roth, P. M., Wallner, J., & Egger, J. (2019). PET-Train: Automatic Ground Truth Generation from PET Acquisitions for Urinary Bladder Segmentation in CT Images using Deep Learning. Paper presented at IEEE Biomedical Engineering International Conference, Chiang Mai, Thailand. https://doi.org/10.1109/BMEiCON.2018.8609954

PET-Train: Automatic Ground Truth Generation from PET Acquisitions for Urinary Bladder Segmentation in CT Images using Deep Learning. / Gsaxner, Christina; Pfarrkirchner, Birgit; Lindner, Lydia; Pepe, Antonio; Roth, Peter M.; Wallner, Jürgen; Egger, Jan.

2019. Paper presented at IEEE Biomedical Engineering International Conference, Chiang Mai, Thailand.

Research output: Contribution to conferencePaperResearchpeer-review

Gsaxner, C, Pfarrkirchner, B, Lindner, L, Pepe, A, Roth, PM, Wallner, J & Egger, J 2019, 'PET-Train: Automatic Ground Truth Generation from PET Acquisitions for Urinary Bladder Segmentation in CT Images using Deep Learning' Paper presented at IEEE Biomedical Engineering International Conference, Chiang Mai, Thailand, 21/11/18, . https://doi.org/10.1109/BMEiCON.2018.8609954
Gsaxner C, Pfarrkirchner B, Lindner L, Pepe A, Roth PM, Wallner J et al. PET-Train: Automatic Ground Truth Generation from PET Acquisitions for Urinary Bladder Segmentation in CT Images using Deep Learning. 2019. Paper presented at IEEE Biomedical Engineering International Conference, Chiang Mai, Thailand. https://doi.org/10.1109/BMEiCON.2018.8609954
Gsaxner, Christina ; Pfarrkirchner, Birgit ; Lindner, Lydia ; Pepe, Antonio ; Roth, Peter M. ; Wallner, Jürgen ; Egger, Jan. / PET-Train: Automatic Ground Truth Generation from PET Acquisitions for Urinary Bladder Segmentation in CT Images using Deep Learning. Paper presented at IEEE Biomedical Engineering International Conference, Chiang Mai, Thailand.
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