ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

Gabriela-Luana Bindea, Bernhard Mlecnik, Hubert Hackl, Pornpimol Charoentong, Marie Tosolini, Amos Kirilovsky, Wolf-Herman Fridman, Franck Pagès, Zlatko Trajanoski, Jérôme Galon

    Research output: Contribution to journalArticle

    Abstract

    We have developed ClueGO, an easy to use Cytoscape plug-in that strongly improves biological interpretation of large lists of genes. ClueGO integrates Gene Ontology (GO) terms as well as KEGG/BioCarta pathways and creates a functionally organized GO/pathway term network. It can analyze one or compare two lists of genes and comprehensively visualizes functionally grouped terms. A one-click update option allows ClueGO to automatically download the most recent GO/KEGG release at any time. ClueGO provides an intuitive representation of the analysis results and can be optionally used in conjunction with the GOlorize plug-in.
    Original languageEnglish
    Pages (from-to)1091-1093
    JournalBioinformatics
    Volume25
    Issue number8
    DOIs
    Publication statusPublished - 2009

    Treatment code (Nähere Zuordnung)

    • Application

    Fingerprint Dive into the research topics of 'ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks'. Together they form a unique fingerprint.

    Cite this