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  • 2020
  • 2019
  • 2018
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  • Jan Egger
2020

A comprehensive Workflow and Framework for immersive Virtual Endoscopy of dissected Aortae from CTA Data

Egger, J., Gunacker, S., Pepe, A., Melito, G. M., Gsaxner, C., Li, J., Ellermann, K. & Chen, X., 2020, Proceedings SPIE: Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions, and Modeling. Vol. 11315.

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

IRIS: interactive real-time feedback image segmentation with deep learning

Pepe, A., Schussnig, R., Li, J., Gsaxner, C., Chen, X., Fries, T. P. & Egger, J., 2020.

Research output: Contribution to conferencePaperResearchpeer-review

2019

A Client/Server Based Online Environment for Manual Segmentation of Medical Images

Wild, D., Weber, M. & Egger, J., 2019, The 23rd Central European Seminar on Computer Graphics (CESCG). p. 1-8

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

A Client/Server based Online Environment for the Calculation of Medical Segmentation Scores

Weber, M., Wild, D., Wallner, J. & Egger, J., 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). p. 3463-3467 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

A Marker-Less Registration Approach for Mixed Reality–Aided Maxillofacial Surgery: a Pilot Evaluation

Pepe, A., Trotta, G. F., Mohr-Ziak, P., Gsaxner, C., Wallner, J., Bevilacqua, V. & Egger, J., 4 Sep 2019, In : Journal of digital imaging. 32, 6, p. 1008-1018 11 p.

Research output: Contribution to journalArticleResearchpeer-review

A Review on Multiplatform Evaluations of Semi-Automatic Open-Source Based Image Segmentation for Cranio-Maxillofacial Surgery

Wallner, J., Schwaiger, M., Hochegger, K. M., Gsaxner, C., Zemann, W. & Egger, J., 2019, In : Computer methods and programs in biomedicine. 182, 23 p., 105102.

Research output: Contribution to journalArticleResearchpeer-review

Automated Computer-aided Design of Cranial Implants Using a Deep Volumetric Convolutional Denoising Autoencoder

Morais, A., Egger, J. & Alves, V., 2019, New Knowledge in Information Systems and Technologies: WorldCIST'19 2019. Rocha, Á., Adeli, H., Reis, L. & Costanzo, S. (eds.). Cham: Springer, Vol. 1. p. 151-160 (Advances in Intelligent Systems and Computing; vol. 932).

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Computed tomography data collection of the complete human mandible and valid clinical ground truth models

Wallner, J., Mischak, I. & Egger, J., 2019, In : Scientific Data . 6, 14 p., 190003.

Research output: Contribution to journalArticleResearchpeer-review

Open Access

Depth-Awareness in a System for Mixed-Reality Aided Surgical Procedures

Sylos Labini, M., Gsaxner, C., Pepe, A., Wallner, J., Egger, J. & Bevilacqua, V., 2019, Intelligent Computing Methodologies - 15th International Conference, ICIC 2019, Proceedings. Huang, Z-K., Hussain, A. & Huang, D-S. (eds.). Springer Verlag Heidelberg, p. 716-726 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11645 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Exploit fully automatic low-level segmented PET data for training high-level deep learning algorithms for the corresponding CT data

Gsaxner, C., Roth, P. M., Egger, J. & Wallner, J., 2019, In : PLoS ONE. p. e0212550

Research output: Contribution to journalArticleResearchpeer-review

Facial model collection for medical augmented reality in oncologic cranio-maxillofacial surgery

Gsaxner, C., Wallner, J., Chen, X., Zemann, W. & Egger, J., 9 Dec 2019, In : Scientific Data . 2019, 1

Research output: Contribution to journalArticleResearchpeer-review

Free thoracodorsal, perforator-scapular flap based on the angular artery (TDAP-Scap-aa): Clinical experiences and description of a novel technique for single flap reconstruction of extensive oromandibular defects

Pau, M., Wallner, J., Feichtinger, M., Schwaiger, M., Egger, J., Cambiaso-Daniel, J., Winter, R., Jakse, N. & Zemann, W., 2019, In : Journal of Cranio-Maxillofacial Surgery. 47, 10, p. 1617-1625

Research output: Contribution to journalArticleResearchpeer-review

Learning from the Truth: Fully Automatic Ground Truth Generation for Training of Medical Deep Learning Networks

Gsaxner, C., Roth, P. M., Wallner, J. & Egger, J., 2019, Proceedings of the Joint ARW & OAGM Workshop 2019. Pichler, A., Roth, P. M., Slabatnig, R., Stübl, G. & Vincze, M. (eds.). Graz: Verlag der Technischen Universität Graz, p. 173-174

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Open Access

Markerless Image-to-Face Registration for Untethered Augmented Reality in Head and Neck Surgery

Gsaxner, C., Pepe, A., Schmalstieg, D., Egger, J. & Wallner, J., 2019, International Conference on Medical Image Computing and Computer-Assisted Intervention. p. 236-244

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Pattern Recognition and Mixed Reality for Computer-Aided Maxillofacial Surgery and Oncological Assessment

Pepe, A., Trotta, G. F., Gsaxner, C., Schmalstieg, D., Wallner, J., Egger, J. & Bevilacqua, V., 2019, BMEiCON 2018 - 11th Biomedical Engineering International Conference. 8609921

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

PET-Train: Automatic Ground Truth Generation from PET Acquisitions for Urinary Bladder Segmentation in CT Images using Deep Learning

Gsaxner, C., Pfarrkirchner, B., Lindner, L., Pepe, A., Roth, P. M., Wallner, J. & Egger, J., 2019.

Research output: Contribution to conferencePaperResearchpeer-review

Using Synthetic Training Data for Deep Learning-Based GBM Segmentation

Lindner, L., Narnhofer, D., Weber, M., Gsaxner, C., Egger, J. & Kolodziej, M., 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). Institute of Electrical and Electronics Engineers, p. 6724-6729 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

2018

Chemotherapeutic agents eligible for prior dosing in pancreatic cancer patients requiring hemodialysis: A systematic review

Hann, A., Nosalski, E., Hermann, P. C., Egger, J., Seufferlein, T. & Keller, F., 1 Aug 2018, In : Clinical Nephrology. 90, 2, p. 125-141 17 p.

Research output: Contribution to journalArticleResearchpeer-review

Clinical evaluation of semi-automatic open-source algorithmic software segmentation of the mandibular bone: Practical feasibility and assessment of a new course of action

Wallner, J., Hochegger, K., Chen, X., Mischak, I., Reinbacher, K., Pau, M., Zrnc, T., Schwenzer-Zimmerer, K., Zemann, W., Schmalstieg, D. & Egger, J., 2018, In : PLoS ONE. 13, 5

Research output: Contribution to journalArticleResearchpeer-review

Open Access

Exploit 18F-FDG enhanced urinary bladder in PET data for deep learning ground truth generation in CT scans

Gsaxner, C., Pfarrkirchner, B., Lindner, L., Jakse, N., Wallner, J., Schmalstieg, D. & Egger, J., 12 Mar 2018, Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE Press, SPIE - The International Society for Optical Engineering

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Fully Convolutional Mandible Segmentation on a valid Ground-Truth Dataset

Egger, J., Pfarrkirchner, B., Gsaxner, C., Lindner, L., Schmalstieg, D. & Wallner, J., 2018, Proceedings IEEE Engineering in Medicine and Biology Conference (EMBC).

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Lower jawbone data generation for deep learning tools under MeVisLab

Pfarrkirchner, B., Gsaxner, C., Lindner, L., Jakse, N., Wallner, J., Schmalstieg, D. & Egger, J., 2018.

Research output: Contribution to conferencePaperResearchpeer-review

Multi-threaded integration of HTC-Vive and MeVisLab

Gunacker, S., Gall, M., Schmalstieg, D. & Egger, J., 2018.

Research output: Contribution to conferencePaperResearchpeer-review

TuMore: generation of synthetic brain tumor MRI data for deep learning based segmentation approaches

Lindner, L., Pfarrkirchner, B., Gsaxner, C., Schmalstieg, D. & Egger, J., 2018.

Research output: Contribution to conferencePaperResearchpeer-review

Open Access
2016

AR (augmented reality)-Paradigmenwechsel im Therapiedesign

Reinbacher, K., Wallner, J., Egger, J., Voglreiter, P., Pau, M., Zrnc, T., Feichtinger, M. & Schwenzer-Zimmerer, K., 2016.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

A semi-automatic computer-aided method for surgical template design

Chen, X., Xu, L., Yang, Y. & Egger, J., 2016, In : Scientific Reports. p. 1-18

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Clinical Evaluation of Mandibular Bone Segmentation

Egger, J., Hochegger, K., Gall, M., Reinbacher, K., Schwenzer-Zimmerer, K., Wallner, J. & Schmalstieg, D., 1 Aug 2016, Proc. IEEE Engineering in Medicine and Biology Society (EMBC'16), Posters. Orlando, FL, USA: IEEE Computer Society

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Computer-Aided Planning and Reconstruction of Cranial 3D Implants

Gall, M., Li, X., Chen, X., Schmalstieg, D. & Egger, J., 1 Aug 2016, Proc. IEEE Engineering in Medicine and Biology Society (EMBC'16). Orlando, FL, USA

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Computer-Aided Planning of Cranial 3D Implants

Gall, M., Chen, X., Schmalstieg, D. & Egger, J., 1 Jun 2016, In : International Journal of Computer Assisted Radiology and Surgery. 11, Suppl 1, p. 187

Research output: Contribution to journalArticleResearchpeer-review

Computer-aided Reconstruction of Facial Defects

Gall, M., Wallner, J., Schwenzer-Zimmerer, K., Schmalstieg, D., Reinbacher, K. & Egger, J., 1 Aug 2016.

Research output: Contribution to conferencePosterResearchpeer-review

Development of a computer-aided design software for dental splint in orthognathic surgery

Chen, X., Li, X., Xu, L., Sun, Y., Politis, C. & Egger, J., 14 Dec 2016, In : Scientific Reports. 6, p. 38867

Research output: Contribution to journalArticleResearchpeer-review

Image-guided real-time-segmentation of the mandibular bone: Can a simple Segmentation approach provide a satisfying result for a practicable use?

Wallner, J., Reinbacher, K., Egger, J., Pau, M., Zemann, W., Zrnc, T., Schmalstieg, D. & Schwenzer-Zimmerer, K., 2016.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Improvement in advanced pancreatic cancer survival with novel chemotherapeutic strategies - experience of a community based hospital

Hann, A., Bohle, W., Egger, J. & Zoller, W. G., Oct 2016, In : Zeitschrift für Gastroenterologie. 54, 10, p. 1138-1142 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Segmentierung medizinischer Bilddaten und bildgestützte intraoperative Navigation

Egger, J., Dec 2016, 304 p.

Research output: ThesisHabilitationResearch

Open Access
File

US-Cut: interactive algorithm for rapid detection and segmentation of liver tumors in ultrasound acquisitions

Egger, J., Voglreiter, P., Hofmann, M., Chen, X., Zoller, W. G., Schmalstieg, D., Hann, A. & Dokter, M., 2016, Proc. SPIE. Vol. 9790. p. 97901C-97901C-6

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review