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Publication Year

  • 2020
  • 2019
  • 2018
  • 2017
  • 2016

Author

  • Jan Egger
2020

A comprehensive Workflow and Framework for immersive Virtual Endoscopy of dissected Aortae from CTA Data

Egger, J., Gunacker, S., Pepe, A., Melito, G. M., Gsaxner, C., Li, J., Ellermann, K. & Chen, X., 2020, Proceedings SPIE: Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions, and Modeling. Vol. 11315.

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Deep Learning for Cranial Defect Reconstruction

Li, J., Jan 2020, 68 p.

Research output: ThesisMaster's ThesisResearch

Open Access
File

IRIS: interactive real-time feedback image segmentation with deep learning

Pepe, A., Schussnig, R., Li, J., Gsaxner, C., Chen, X., Fries, T. P. & Egger, J., 2020.

Research output: Contribution to conferencePaperResearchpeer-review

2019

A Client/Server Based Online Environment for Manual Segmentation of Medical Images

Wild, D., Weber, M. & Egger, J., 2019, The 23rd Central European Seminar on Computer Graphics (CESCG). p. 1-8

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

A Client/Server based Online Environment for the Calculation of Medical Segmentation Scores

Weber, M., Wild, D., Wallner, J. & Egger, J., 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). p. 3463-3467 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

A Marker-Less Registration Approach for Mixed Reality–Aided Maxillofacial Surgery: a Pilot Evaluation

Pepe, A., Trotta, G. F., Mohr-Ziak, P., Gsaxner, C., Wallner, J., Bevilacqua, V. & Egger, J., 4 Sep 2019, In : Journal of digital imaging. 32, 6, p. 1008-1018 11 p.

Research output: Contribution to journalArticleResearchpeer-review

A Review on Multiplatform Evaluations of Semi-Automatic Open-Source Based Image Segmentation for Cranio-Maxillofacial Surgery

Wallner, J., Schwaiger, M., Hochegger, K. M., Gsaxner, C., Zemann, W. & Egger, J., 2019, In : Computer methods and programs in biomedicine. 182, 23 p., 105102.

Research output: Contribution to journalArticleResearchpeer-review

Automated Computer-aided Design of Cranial Implants Using a Deep Volumetric Convolutional Denoising Autoencoder

Morais, A., Egger, J. & Alves, V., 2019, New Knowledge in Information Systems and Technologies: WorldCIST'19 2019. Rocha, Á., Adeli, H., Reis, L. & Costanzo, S. (eds.). Cham: Springer, Vol. 1. p. 151-160 (Advances in Intelligent Systems and Computing; vol. 932).

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Computed tomography data collection of the complete human mandible and valid clinical ground truth models

Wallner, J., Mischak, I. & Egger, J., 2019, In : Scientific Data . 6, 14 p., 190003.

Research output: Contribution to journalArticleResearchpeer-review

Open Access

Depth-Awareness in a System for Mixed-Reality Aided Surgical Procedures

Sylos Labini, M., Gsaxner, C., Pepe, A., Wallner, J., Egger, J. & Bevilacqua, V., 2019, Intelligent Computing Methodologies - 15th International Conference, ICIC 2019, Proceedings. Huang, Z-K., Hussain, A. & Huang, D-S. (eds.). Springer Verlag Heidelberg, p. 716-726 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11645 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Exploit fully automatic low-level segmented PET data for training high-level deep learning algorithms for the corresponding CT data

Gsaxner, C., Roth, P. M., Egger, J. & Wallner, J., 2019, In : PLoS ONE. p. e0212550

Research output: Contribution to journalArticleResearchpeer-review

Facial model collection for medical augmented reality in oncologic cranio-maxillofacial surgery

Gsaxner, C., Wallner, J., Chen, X., Zemann, W. & Egger, J., 9 Dec 2019, In : Scientific Data . 2019, 1

Research output: Contribution to journalArticleResearchpeer-review

Free thoracodorsal, perforator-scapular flap based on the angular artery (TDAP-Scap-aa): Clinical experiences and description of a novel technique for single flap reconstruction of extensive oromandibular defects

Pau, M., Wallner, J., Feichtinger, M., Schwaiger, M., Egger, J., Cambiaso-Daniel, J., Winter, R., Jakse, N. & Zemann, W., 2019, In : Journal of Cranio-Maxillofacial Surgery. 47, 10, p. 1617-1625

Research output: Contribution to journalArticleResearchpeer-review

Learning from the Truth: Fully Automatic Ground Truth Generation for Training of Medical Deep Learning Networks

Gsaxner, C., Roth, P. M., Wallner, J. & Egger, J., 2019, Proceedings of the Joint ARW & OAGM Workshop 2019. Pichler, A., Roth, P. M., Slabatnig, R., Stübl, G. & Vincze, M. (eds.). Graz: Verlag der Technischen Universität Graz, p. 173-174

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Open Access

Markerless Image-to-Face Registration for Untethered Augmented Reality in Head and Neck Surgery

Gsaxner, C., Pepe, A., Schmalstieg, D., Egger, J. & Wallner, J., 2019, International Conference on Medical Image Computing and Computer-Assisted Intervention. p. 236-244

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Pattern Recognition and Mixed Reality for Computer-Aided Maxillofacial Surgery and Oncological Assessment

Pepe, A., Trotta, G. F., Gsaxner, C., Schmalstieg, D., Wallner, J., Egger, J. & Bevilacqua, V., 2019, BMEiCON 2018 - 11th Biomedical Engineering International Conference. 8609921

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

PET-Train: Automatic Ground Truth Generation from PET Acquisitions for Urinary Bladder Segmentation in CT Images using Deep Learning

Gsaxner, C., Pfarrkirchner, B., Lindner, L., Pepe, A., Roth, P. M., Wallner, J. & Egger, J., 2019.

Research output: Contribution to conferencePaperResearchpeer-review

Using Synthetic Training Data for Deep Learning-Based GBM Segmentation

Lindner, L., Narnhofer, D., Weber, M., Gsaxner, C., Egger, J. & Kolodziej, M., 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). Institute of Electrical and Electronics Engineers, p. 6724-6729 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

2018

Chemotherapeutic agents eligible for prior dosing in pancreatic cancer patients requiring hemodialysis: A systematic review

Hann, A., Nosalski, E., Hermann, P. C., Egger, J., Seufferlein, T. & Keller, F., 1 Aug 2018, In : Clinical Nephrology. 90, 2, p. 125-141 17 p.

Research output: Contribution to journalArticleResearchpeer-review

Clinical evaluation of semi-automatic open-source algorithmic software segmentation of the mandibular bone: Practical feasibility and assessment of a new course of action

Wallner, J., Hochegger, K., Chen, X., Mischak, I., Reinbacher, K., Pau, M., Zrnc, T., Schwenzer-Zimmerer, K., Zemann, W., Schmalstieg, D. & Egger, J., 2018, In : PLoS ONE. 13, 5

Research output: Contribution to journalArticleResearchpeer-review

Open Access

Exploit 18F-FDG enhanced urinary bladder in PET data for deep learning ground truth generation in CT scans

Gsaxner, C., Pfarrkirchner, B., Lindner, L., Jakse, N., Wallner, J., Schmalstieg, D. & Egger, J., 12 Mar 2018, Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE Press, SPIE - The International Society for Optical Engineering

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Fully Convolutional Mandible Segmentation on a valid Ground-Truth Dataset

Egger, J., Pfarrkirchner, B., Gsaxner, C., Lindner, L., Schmalstieg, D. & Wallner, J., 2018, Proceedings IEEE Engineering in Medicine and Biology Conference (EMBC).

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Lower jawbone data generation for deep learning tools under MeVisLab

Pfarrkirchner, B., Gsaxner, C., Lindner, L., Jakse, N., Wallner, J., Schmalstieg, D. & Egger, J., 2018.

Research output: Contribution to conferencePaperResearchpeer-review

Multi-threaded integration of HTC-Vive and MeVisLab

Gunacker, S., Gall, M., Schmalstieg, D. & Egger, J., 2018.

Research output: Contribution to conferencePaperResearchpeer-review

TuMore: generation of synthetic brain tumor MRI data for deep learning based segmentation approaches

Lindner, L., Pfarrkirchner, B., Gsaxner, C., Schmalstieg, D. & Egger, J., 2018.

Research output: Contribution to conferencePaperResearchpeer-review

Open Access
2017

Algorithm guided outlining of 105 pancreatic cancer liver metastases in Ultrasound

Hann, A., Bettac, L., Haenle, M. M., Graeter, T., Berger, A. W., Dreyhaupt, J., Schmalstieg, D., Zoller, W. G. & Egger, J., 6 Oct 2017, In : Scientific Reports. 7, 1, p. 12779

Research output: Contribution to journalArticleResearchpeer-review

Algorithmic evaluation of lower jawbone segmentations

Egger, J., Hochegger, K., Gall, M., Chen, X., Reinbacher, K., Schwenzer-Zimmerer, K., Schmalstieg, D. & Wallner, J., 1 Feb 2017, Proc. SPIE Medical Imaging. Orlando, FL, USA

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Augmented Reality (AR)-guided intraoperative Navigation

Egger, J., 2017.

Research output: Contribution to conferencePosterResearch

Automatic urinary bladder segmentation in CT images using deep learning

Gsaxner, C., 2017

Research output: ThesisMaster's ThesisResearch

A VR-based surgical simulation system using patient- specific physical computing model

Egger, J., 2017.

Research output: Contribution to conferencePosterResearchpeer-review

Computer-aided implant design for the restoration of cranial defects

Chen, X., Xu, L., Li, X. & Egger, J., 23 Jun 2017, In : Scientific Reports. 7, 1, p. 4199

Research output: Contribution to journalArticleResearchpeer-review

Computer-aided position planning of miniplates to treat facial bone defects

Egger, J., Wallner, J., Gall, M., Chen, X., Schwenzer-Zimmerer, K., Reinbacher, K. & Schmalstieg, D., 2017, In : PLoS ONE. 12, 8, p. e0182839

Research output: Contribution to journalArticleResearchpeer-review

Evaluation of an Interactive Segmentation Algorithm using Ultrasound Images of Pancreatic Cancer Liver Metastases

Egger, J., 2017.

Research output: Contribution to conferencePosterResearchpeer-review

Feasibility of alternating induction and maintenance chemotherapy in pancreatic cancer

Hann, A., Bohle, W., Egger, J. & Zoller, W., 31 Jan 2017, In : Scientific Reports. 7, 7 p., 41549.

Research output: Contribution to journalArticleResearchpeer-review

HTC Vive MeVisLab integration via OpenVR for medical applications

Egger, J., Gall, M., Wallner, J., Boechat, P., Hann, A., Li, X., Chen, X. & Schmalstieg, D., 2017, In : PLoS ONE. 12, 3, p. e0173972

Research output: Contribution to journalArticleResearchpeer-review

In-depth Assessment of an Interactive Graph-based Approach for the Segmentation for Pancreatic Metastasis in Ultrasound Acquisitions of the Liver with two Specialists in Internal Medicine

Egger, J., Chen, X., Bettac, L., Haenle, M. M., Graeter, T., Zoller, W., Schmalstieg, D. & Hann, A., 2017.

Research output: Contribution to conferencePaperResearchpeer-review

Integration of the HTC Vive into the Medical Platform MeVisLab

Egger, J., Gall, M., Hann, A., Li, X., Chen, X., Schmalstieg, D., Boechat de Almeida Germano, P. & Wallner, J., 1 Feb 2017, Proc. SPIE Medical Imaging. Orlando, FL, USA

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Integration of the HTC Vive into the Medical Platform MeVisLab

Egger, J., 2017.

Research output: Contribution to conferencePosterResearchpeer-review

Interactive algorithm for the measurement of pancreatic cancer liver metastases in ultrasound

Egger, J., 2017.

Research output: Contribution to conferencePosterResearchpeer-review

Interactive Outlining of Pancreatic Cancer Liver Metastases in Ultrasound Images

Egger, J., Schmalstieg, D., Chen, X., Zoller, W. G. & Hann, A., 18 Apr 2017, In : Scientific Reports. 7, 1, p. 892

Research output: Contribution to journalArticleResearchpeer-review

Interactive Planning of Miniplates

Gall, M., Reinbacher, K., Stanzel, J., Chen, X., Schwenzer-Zimmerer, K., Wallner, J., Schmalstieg, D. & Egger, J., 1 Feb 2017, Proc. SPIE Medical Imaging. Orlando, FL, USA

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Interactive Planning of Miniplates

Egger, J., 2017.

Research output: Contribution to conferencePosterResearchpeer-review

Interactive reconstructions of cranial 3D implants under MeVisLab as an alternative to commercial planning software

Egger, J., Gall, M., Tax, A., Ücal, M., Zefferer, U., Li, X., von Campe, G., Schäfer, U., Schmalstieg, D. & Chen, X., 2017, In : PLoS ONE. 12, 3, p. e0172694

Research output: Contribution to journalArticleResearchpeer-review

Interaktive Planung von Gesichtsimplantaten

Gall, M., Reinbacher, K., Schwenzer-Zimmerer, K., Schmalstieg, D., Egger, J. & Wallner, J., 1 Mar 2017, Proc. Bildverarbeitung fuer die Medizin (BVM). Heidelberg, Germany

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Interaktive Planung von Gesichtsimplantaten

Egger, J., 2017.

Research output: Contribution to conferencePosterResearchpeer-review

Vertebral body segmentation with GrowCut: Initial experience, workflow and practical application

Egger, J., Nimsky, C. & Chen, X., 2017, In : SAGE open medicine. 5, p. 2050312117740984

Research output: Contribution to journalArticleResearchpeer-review

2016

AR (augmented reality)-Paradigmenwechsel im Therapiedesign

Reinbacher, K., Wallner, J., Egger, J., Voglreiter, P., Pau, M., Zrnc, T., Feichtinger, M. & Schwenzer-Zimmerer, K., 2016.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

A semi-automatic computer-aided method for surgical template design

Chen, X., Xu, L., Yang, Y. & Egger, J., 2016, In : Scientific Reports. p. 1-18

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Clinical Evaluation of Mandibular Bone Segmentation

Egger, J., Hochegger, K., Gall, M., Reinbacher, K., Schwenzer-Zimmerer, K., Wallner, J. & Schmalstieg, D., 1 Aug 2016, Proc. IEEE Engineering in Medicine and Biology Society (EMBC'16), Posters. Orlando, FL, USA: IEEE Computer Society

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review