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  • Gerhard Thallinger
2012

Integrative Analysis Methods for Omics Data

Tomescu, O. A., Dragosits, M., Graf, A., Gasser, B., Mattanovich, D. & Thallinger, G., 2012, 11th European Conference on Computational Biology (ECCB 12) - List of accepted poster abstacts. ., p. 2-2

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Microarray Meta-Analysis: From Data to Expression to Biological Relationships

Feichtinger, J., Thallinger, G., McFarlane, R. J. & Larcombe, L. D., 2012, (Accepted/In press) Computational Medicine: Tools and Challenges. 1 ed. Wien: Springer

Research output: Chapter in Book/Report/Conference proceedingChapterResearch

Lipidomics, Mass Spectrometry, and Bioinformatics

Hartler, J., Köfeler, H., Baker, C., Tharakan, R. & Thallinger, G., 2012, Computational Medicine. 1 ed. Wien: Springer, p. 93-109

Research output: Chapter in Book/Report/Conference proceedingChapterResearch

2017

Reconstruction of mitochondrial genotypes from diverse next generation sequencing datasets

Ulz, P., Speicher, M. R. & Thallinger, G., 2017, Proceedings of the 10th International joint conference on Biomedical Engineering Systems and Technologies. Porto, Portugal, p. in press

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

2012

10th Austrian Proteomic Research Symposium - Special Focus on Functional Proteomics

Hartler, J. (ed.), Birner-Grünberger, R. (ed.), Gesslbauer, B. (ed.) & Thallinger, G. (ed.), 2012, .

Research output: Book/ReportAnthologyResearch

2018

Bioinformatic Analysis of FXR related ChIP-seq data

Panzitt, K., Wagner, M. & Thallinger, G., Aug 2018.

Research output: Contribution to conferencePosterResearchpeer-review

2017

The Human Gastric Microbiome Is Predicated upon Infection with Helicobacter pylori

Klymiuk, I., Bilgilier, C., Stadlmann, A., Thannesberger, J., Kastner, M-T., Högenauer, C., Püspök, A., Biowski-Frotz, S., Schrutka-Kölbl, C., Thallinger, G. G. & Steininger, C., 14 Dec 2017, In : Frontiers in Microbiology . 8, 2508.

Research output: Contribution to journalArticleResearchpeer-review

2014

Towards improved membrane protein production in Pichia pastoris: general and specific transcriptional response to membrane protein overexpression

Vogl, T., Thallinger, G., Zellnig, G., Drew, D., Cregg, J., Glieder, A. & Freigaßner, M. E., 2014, In : New biotechnology. 31, 6, p. 538-552

Research output: Contribution to journalArticleResearchpeer-review

2011

Genome Sequence of the Ruminal Bacterium Megasphaera elsdenii

Marx, H., Graf, A. B., Tatoo, N. E., Thallinger, G., Mattanovich, D. & Sauer, M., 2011, In : Journal of bacteriology. 193, 19, p. 5578-5579

Research output: Contribution to journalArticleResearchpeer-review

2014

Untargeted profiling of tracer-derived metabolites using stable isotopic labeling and fast polarity-switching LC-ESI-HRMS

Kluger, B., Bueschl, C., Neumann, N., Stückler, R., Doppler, M., Chassy, A. W., Waterhouse, A. L., Rechthaler, J., Kampleitner, N., Thallinger, G., Adam, G., Krska, R. & Schuhmacher, R., 2014, In : Analytical Chemistry. 86, 23, p. 11533-11537

Research output: Contribution to journalArticleResearchpeer-review

2015

miR-199a and miR-497 Are Associated with Better Overall Survival due to Increased Chemosensitivity in Diffuse Large B-Cell Lymphoma Patients.

Troppan, K., Wenzl, K., Pichler, M., Pursche, B., Schwarzenbacher, D., Feichtinger, J., Thallinger, G., Beham-Schmid, C., Neumeister, P. & Deutsch, A. J., 2015, In : International Journal of Molecular Sciences . 16, 8, p. 18077-18095

Research output: Contribution to journalArticleResearchpeer-review

2012

A sequence comparison and gene expression data integration add-on for the Pathway Tools software

Krempl, P., Mairhofer, J., Striedner, G. & Thallinger, G., 2012, In : Bioinformatics. 28, 17, p. 2283-2284

Research output: Contribution to journalArticleResearchpeer-review

Lipid Data Analyzer: unattended identification and quantitation of lipids in LC‐MS data

Hartler, J., Trötzmüller, M., Chitraju, C., Spener, F., Köfeler, H. & Thallinger, G., 21 Sep 2012.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

2019

Gene and miRNA expression in giant cell arteritis-a concise systematic review of significantly modified studies

Kuret, T., Burja, B., Feichtinger, J., Thallinger, G. G., Frank-Bertoncelj, M., Lakota, K., Žigon, P., Sodin-Semrl, S., Čučnik, S., Tomšič, M. & Hočevar, A., Feb 2019, In : Clinical Rheumatology. 38, 2, p. 307-316

Research output: Contribution to journalArticleResearchpeer-review

2012

Autoimmune response following influenza vaccination

Perdan-Pirkmajer, K., Thallinger, G., Snoj, N., Cucnik, S., Žigon, P., Kveder, T., Logar, D., Praprotnik, S., Tomsic, M., Sodin-Semrl, S. & Ambrozic, A., 2012, In : Lupus. 21, 2, p. 175-183

Research output: Contribution to journalArticleResearchpeer-review

2017

Deciphering lipid structures based on platform-independent decision rules

Hartler, J., Triebl, A., Ziegl, A., Trötzmüller, M., Rechberger, G. N., Zeleznik, O. A., Zierler, K. A., Torta, F., Cazenave-Gassiot, A., Wenk, M. R., Fauland, A., Wheelock, C. E., Armando, A. M., Quehenberger, O., Zhang, Q., Wakelam, M. JO., Haemmerle, G., Spener, F., Köfeler, H. C. & Thallinger, G. G., Nov 2017.

Research output: Contribution to conferencePosterResearchpeer-review

2014

Comparative Genome Analysis of Campylobacter fetus Subspecies Revealed Horizontally Acquired Genetic Elements Important for Virulence and Niche Specificity

Kienesberger, S., Sprenger, H., Wolfgruber, S., Halwachs, B., Thallinger, G., Perez-Perez, G. I., Blaser, M. J., Zechner, E. & Gorkiewicz, G., 2014, In : PLoS ONE. 9, 1, p. e85491-e85491

Research output: Contribution to journalArticleResearchpeer-review

2017

Deciphering lipid structures based on platform-independent decision rules

Hartler, J., Triebl, A., Ziegl, A., Trötzmüller, M., Rechberger, G. N., Zeleznik, O. A., Zierler, K. A., Torta, F., Cazenave-Gassiot, A., Wenk, M. R., Fauland, A., Wheelock, C. E., Armando, A. M., Quehenberger, O., Zhang, Q., Wakelam, M. JO., Haemmerle, G., Spener, F., Köfeler, H. C. & Thallinger, G. G., 18 Oct 2017.

Research output: Contribution to conferencePosterResearch

Deciphering lipid structures based on platform-independent decision rules

Hartler, J., Triebl, A., Ziegl, A., Trötzmüller, M., Rechberger, G. N., Zeleznik, O. A., Zierler, K. A., Torta, F., Cazenave-Gassiot, A., Wenk, M. R., Fauland, A., Wheelock, C. E., Armando, A. M., Quehenberger, O., Zhang, Q., Wakelam, M. JO., Haemmerle, G., Spener, F., Köfeler, H. C. & Thallinger, G. G., 13 Sep 2017.

Research output: Contribution to conferencePosterResearchpeer-review

2018

Deletion of Adipose Triglyceride Lipase Links Triacylglycerol Accumulation to a More-Aggressive Phenotype in A549 Lung Carcinoma Cells

Tomin, T., Fritz, K., Gindlhuber, J., Waldherr, L., Pucher, B., Thallinger, G. G., Nomura, D. K., Schittmayer, M. & Birner-Gruenberger, R., 6 Apr 2018, In : Journal of proteome research. 17, 4, p. 1415-1425

Research output: Contribution to journalArticleResearchpeer-review

2015

Restoration of female fertility in Trichoderma reesei QM6a provides the basis for inbreeding

Linke, R., Thallinger, G., Haarmann, T., Eidner, J., Schreiter, M., Lorenz, P., Seiboth, B. & Kubicek, C. P., 2015, In : Biotechnology for Biofuels . 8, p. 155-155

Research output: Contribution to journalArticleResearchpeer-review

2012

Integrative Analysis Methods for Omics Data

Tomescu, O. A., Dragosits, M., Graf, A., Gasser, B., Mattanovich, D. & Thallinger, G., 2012.

Research output: Contribution to conferencePosterResearch

2011

Population dynamics of the colonic microbiota in response to osmotic diarrhea

Gorkiewicz, G., Thallinger, G., Trajanoski, S., Stocker, G., Hinterleitner, T., Gülly, C. & Högenauer, C., 2011.

Research output: Contribution to conferencePosterResearch

Phytochemical cluster analysis of extracts from Huang Lian Jie Du Tang and its single constituents

Widowitz, U., Thallinger, G. & Bauer, R., 2011.

Research output: Contribution to conferencePosterResearch

2012

A Sequence Based Validation of Gene Expression Microarray Data

Thallinger, G., Obermayr, E., Charoentong, P., Tong, D., Trajanoski, Z. & Zeillinger, R., 2012, In : American journal of bioinformatics. 1, 1, p. 1-9

Research output: Contribution to journalArticleResearchpeer-review

2014

LC-MS metabolic profiling for the identification of bioactive compounds in Lonicera species

Ortmann, S., Monschein, M., Hartler, J., Zhao, Y. M., Miao, J., Thallinger, G. & Bauer, R., 2014.

Research output: Contribution to conferencePosterResearch

2011

SnoWMAn: high throughput phylotyping

Stocker, G., Snajder, R., Halwachs, B., Trajanoski, S., Gorkiewicz, G. & Thallinger, G., 2011.

Research output: Contribution to conferencePosterResearch

2013

Complete mitochondrial DNA sequences of the threadfin cichlid (Petrochromis trewavasae) and the blunthead cichlid (Tropheus moorii) and patterns of mitochondrial genome evolution in cichlid fishes.

Fischer, C., Koblmüller, S., Gülly, C., Schlötterer, C., Sturmbauer, C. & Thallinger, G., 2013, In : PLoS ONE. 8, 6, p. e67048-e67048

Research output: Contribution to journalArticleResearchpeer-review

2014

LC-MS metabolic profiling for the identification of bioactive compounds in medicinal plants

Ortmann, S., Monschein, M., Hartler, J., Zhao, Y. M., Miao, J., Thallinger, G. & Bauer, R., 2014.

Research output: Contribution to conferencePosterResearch

LC-MS Metabolic Profiling for the Identification of Active Compounds in Lonicera Species

Ortmann, S., Monschein, M., Hartler, J., Zhao, Y. M., Miao, J., Thallinger, G. & Bauer, R., 2014.

Research output: Contribution to conferencePosterResearch

2012

Lipid Data Analyzer: automated identification and quantitation of lipid species in LC-MS data

Hartler, J., Trötzmüller, M., Fauland, A., Büschl, C., Schuhmacher, R., Köfeler, H. & Thallinger, G., 2012.

Research output: Contribution to conferencePosterResearch

2011

Second Year Report, Bioinformatics Integration Network III

Thallinger, G., Stark, A., Novatchkova, M., von Haeseler, A., Hofacker, I., Djinovic-Carugo, K., Bennett, K. L., Baumgartner, C., Colinge, J. & Trajanoski, Z., 2011, .

Research output: Book/ReportOther reportResearch

2012

High-Throughput Characterization of Fungal Communities

Halwachs, B. & Thallinger, G., 2012.

Research output: Contribution to conferencePosterResearch

2011

The complete genome sequence of the rumen bacterium Megasphaera elsdenii

Marx, H., Graf, A. B., Tatoo, N. E., Thallinger, G., Mattanovich, D. & Sauer, M., 2011.

Research output: Contribution to conferencePosterResearch

2014

Metabolic profiling of Lonicera species as a concept to identify compounds with an inhibitory effect on NF-κB transactivation

Ortmann, S., Monschein, M., Hartler, J., Malainer, C., Heiß, E., Zhao, Y. M., Miao, J., Atanasov, A., Thallinger, G., Dirsch, V. & Bauer, R., 2014.

Research output: Contribution to conferencePosterResearch

2019

A Comprehensive FXR Signaling Atlas Derived from Pooled ChIP-seq Data

Jungwirth, E., Panzitt, K., Marschall, H-U., Wagner, M. & Thallinger, G. G., 2019, In : Studies in health technology and informatics. 260, p. 105-112 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
2017

Mitochondrial fragmentation in fatty liver

Gindlhuber, J., Darnhofer, B., Pucher, B., Tomin, T., Thallinger, G. & Birner-Gruenberger, R., 6 Sep 2017.

Research output: Contribution to conferencePosterResearch

2015

The unique hydroxynitrile lyase from fern

Lanfranchi, E., Winkler, M., Pavkov-Keller, T., Köhler, E-M., Diepold, M., Darnhofer, B., Steiner, K., Thallinger, G., Birner-Grünberger, R., van Pelt, S., Gruber, K. & Glieder, A., 2015.

Research output: Contribution to conferencePosterResearch

ATGL and CGI-58 are lipid droplet proteins of the hepatic stellate cell line HSC-T6

Eichmann, T., Grumet, L., Taschler, U., Hartler, J., Heier, C., Woblistin, A., Pajed, L., Kollroser, M., Rechberger, G., Thallinger, G. G., Zechner, R., Haemmerle, G., Zimmermann, R. & Lass, A., 2015, In : Journal of lipid research. 56, p. 1972-1984

Research output: Contribution to journalArticleResearchpeer-review

Open Access
2016

Comprehensive genome and epigenome characterization of CHO cells in response to evolutionary pressures and over time

Feichtinger, J., Hernández, I., Fischer, C., Hanscho, M., Auer, N., Hackl, M., Jadhav, V., Baumann, M., Krempl, P. M., Schmidl, C., Farlik, M., Schuster, M., Merkel, A., Sommer, A., Heath, S., Rico, D., Bock, C., Thallinger, G. G. & Borth, N., Oct 2016, In : Biotechnology and Bioengineering. 113, 10, p. 2241-53 13 p.

Research output: Contribution to journalArticleResearchpeer-review

2020

High-throughput in-field bioprospecting for cyanogenic plants and hydroxynitrile lyases

Tomescu, M-S., Davids, D., DuPlessis, M., Darnhofer, B., Birner-Gruenberger, R., Archer, R., Schwendenwein, D., Thallinger, G., Winkler, M. & Rumbold, K., 2020, In : Biocatalysis and Biotransformation. 38, 3, p. 234-240

Research output: Contribution to journalArticleResearchpeer-review

2016

A Toolbox of Diverse Promoters Related to Methanol Utilization: Functionally Verified Parts for Heterologous Pathway Expression in Pichia pastoris

Vogl, T., Sturmberger, L., Kickenweiz, T., Wasmayer, R., Schmid, C., Hatzl, A-M., Gerstmann, M. A., Pitzer, J., Wagner, M., Thallinger, G. G., Geier, M. & Glieder, A., 19 Feb 2016, In : ACS Synthetic Biology . 5, 2, p. 172-86 15 p.

Research output: Contribution to journalArticleResearchpeer-review

2019

The CXCR4-CXCL12-Axis Is of Prognostic Relevance in DLBCL and Its Antagonists Exert Pro-Apoptotic Effects In Vitro

Pansy, K., Feichtinger, J., Ehall, B., Uhl, B., Sedej, M., Roula, D., Pursche, B., Wolf, A., Zoidl, M., Steinbauer, E., Gruber, V., Greinix, H. T., Prochazka, K. T., Thallinger, G. G., Heinemann, A., Beham-Schmid, C., Neumeister, P., Wrodnigg, T. M., Fechter, K. & Deutsch, A. J., 24 Sep 2019, In : International Journal of Molecular Sciences . 20, 19, 4740.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
2018

Methanol independent induction in Pichia pastoris by simple derepressed overexpression of single transcription factors

Vogl, T., Sturmberger, L., Fauland, P. C., Hyden, P., Fischer, J. E., Schmid, C., Thallinger, G. G., Geier, M. & Glieder, A., 1 Apr 2018, In : Biotechnology and Bioengineering. 115, 4, p. 1037-1050

Research output: Contribution to journalArticleResearchpeer-review

2014

The mzTab Data Exchange Format: communicating MS-based proteomics and metabolomics experimental results to a wider audience

Griss, J., Jones, A. R., Sachsenberg, T., Walzer, M., Laurent, G., Hartler, J., Thallinger, G., Salek, R. M., Steinbeck, C., Nadin, N., Cox, J., Neumann, S., Fan, J., Reisinger, F., Qing-Wei, X., del Toro, N., Perez-Riverol, Y., Ghali, F., Bandeira, N., Xenarios, I. & 3 othersKohlbacher, O., Vizcaino, J. A. & Henning, H., 2014, In : Molecular & cellular proteomics. 13, 10, p. 2765-2775

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
2017

Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily

Lanfranchi, E., Pavkov-Keller, T., Koehler, E-M., Diepold, M., Steiner, K., Darnhofer, B., Hartler, J., Van Den Bergh, T., Joosten, H-J., Gruber-Khadjawi, M., Thallinger, G. G., Birner-Gruenberger, R., Gruber, K., Winkler, M. & Glieder, A., 10 May 2017, In : Scientific Reports. 7, 46738.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
2013

Unique functional diversity within Sphagnum peat bogs

Bragina, A., Oberauner-Wappis, L., Halwachs, B., Thallinger, G., Berg, C., Müller, H. & Berg, G., 2013.

Research output: Contribution to conferencePosterResearch

2014

Ecology, diversity and ecosystem functioning of Sphagnum-dominated bog microbiome.

Bragina, A., Oberauner-Wappis, L., Berg, C., Zachow, C., Halwachs, B., Thallinger, G., Müller, H. & Berg, G., 14 Jun 2014.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

2012

Metagenomics to explore the ecology and biotechnological potential of the Alpine bog microbiome

Oberauner, L., Zachow, C., Müller, H., Thallinger, G., Bragina, A. & Berg, G., 17 Sep 2012.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch