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Author

  • Gerhard Thallinger
2014

Resolving tumor heterogeneity: genes involved in chordoma cell development identified by low-template analysis of morphologically distinct cells

El-Heliebi, A., Kroneis, T., Wagner, K., Meditz, K., Kolb, D., Feichtinger, J., Thallinger, G., Quehenberger, F., Liegl-Atzwanger, B. & Rinner, B., 2014, In : PLoS ONE. 9, 2, p. e87663-e87663

Research output: Contribution to journalArticleResearchpeer-review

2012

Autoimmune response following influenza vaccination

Perdan-Pirkmajer, K., Thallinger, G., Snoj, N., Cucnik, S., Žigon, P., Kveder, T., Logar, D., Praprotnik, S., Tomsic, M., Sodin-Semrl, S. & Ambrozic, A., 2012, In : Lupus. 21, 2, p. 175-183

Research output: Contribution to journalArticleResearchpeer-review

2014

NR4A1-mediated apoptosis supresses lymphomagenesis and is associated with a favorable cancer specific survival in patients with aggressive B-cell lymphomas

Deutsch, A., Rinner, B., Wenzl, K., Pichler, M., Troppan, K., Steinbauer, E., Schwarzenbacher, D., Reitter, S., Feichtinger, J., Tierling, S., Prokesch, A., Scheideler, M., Krogsdam, A., Thallinger, G., Schaider, H., Beham-Schmid, C. & Neumeister, P., 2014, In : Blood. 123, 15, p. 2367-2377

Research output: Contribution to journalArticleResearchpeer-review

2016

Comprehensive (epi)genome characterisation of CHO cells in response to evolutionary pressures

Feichtinger, J., Fischer, C., Borth, N. & Thallinger, G., 16 Sep 2016.

Research output: Contribution to conferencePosterResearchpeer-review

2017

Comprehensive Analysis of Genomic Data for 16 CHO Cell Lines to Investigate the (In)stability of the CHO Genome

Feichtinger, J., Fischer, C., Hernández López, I., Borth, N. & Thallinger, G., 2017.

Research output: Contribution to conferencePosterResearch

2016

Translin and Trax differentially regulate telomere-associated transcript homeostasis

Gomez-Escobar, N., Almobadel, N., Alzahrani, O., Feichtinger, J., Planells-Palop, V., Alshehri, Z., Thallinger, G. G., Wakeman, J. A. & McFarlane, R. J., 7 Jun 2016, In : OncoTarget . 7, 23, p. 33809-20 12 p.

Research output: Contribution to journalArticleResearchpeer-review

2018

Cytoplasmic location of NR4A1 in aggressive lymphomas is associated with a favourable cancer specific survival

Fechter, K., Feichtinger, J., Prochazka, K., Unterluggauer, J. J., Pansy, K., Steinbauer, E., Pichler, M., Haybaeck, J., Prokesch, A., Greinix, H. T., Beham-Schmid, C., Neumeister, P., Thallinger, G. G. & Deutsch, A. J. A., 28 Sep 2018, In : Scientific Reports. 8, 1, 14528.

Research output: Contribution to journalArticleResearchpeer-review

2019

Gene and miRNA expression in giant cell arteritis-a concise systematic review of significantly modified studies

Kuret, T., Burja, B., Feichtinger, J., Thallinger, G. G., Frank-Bertoncelj, M., Lakota, K., Žigon, P., Sodin-Semrl, S., Čučnik, S., Tomšič, M. & Hočevar, A., Feb 2019, In : Clinical Rheumatology. 38, 2, p. 307-316

Research output: Contribution to journalArticleResearchpeer-review

2012

High-throughput characterization and comparison of microbial communities

Halwachs, B., Gorkiewicz, G. & Thallinger, G., 2012, Computational Medicine. Tomlin, C. J. & Greenstreet, M. R. (eds.). 1 ed. Wien: Springer, p. 37-57

Research output: Chapter in Book/Report/Conference proceedingChapterResearch

2019

The CXCR4-CXCL12-Axis Is of Prognostic Relevance in DLBCL and Its Antagonists Exert Pro-Apoptotic Effects In Vitro

Pansy, K., Feichtinger, J., Ehall, B., Uhl, B., Sedej, M., Roula, D., Pursche, B., Wolf, A., Zoidl, M., Steinbauer, E., Gruber, V., Greinix, H. T., Prochazka, K. T., Thallinger, G. G., Heinemann, A., Beham-Schmid, C., Neumeister, P., Wrodnigg, T. M., Fechter, K. & Deutsch, A. J., 24 Sep 2019, In : International Journal of Molecular Sciences . 20, 19, 4740.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
2014

Finished Genome Sequence of Escherichia coli K-12 Strain HMS174 (ATCC 47011)

Mairhofer, J., Krempl, P., Thallinger, G. & Striedner, G., 2014, In : Genome Announcements. 2, 6, p. e00975-14-e00975-14

Research output: Contribution to journalArticleResearchpeer-review

Enhanced whole genome sequence and annotation of Clostridium stercorarium DSM8532T using RNA-seq transcriptomics and high-throughput proteomics

Schellenberg, J. J., Verbeke, T. J., McQueen, P., Krokhin, O. V., Zhang, X., Alvare, G., Fristensky, B., Thallinger, G., Henrissat, B., Wilkins, J. A., Levin, D. B. & Sparling, R., 2014, In : BMC Genomics . 15, 1, p. 567-567

Research output: Contribution to journalArticleResearchpeer-review

2012

Integrative Analysis Methods for Omics Data

Tomescu, O. A., Dragosits, M., Graf, A., Gasser, B., Mattanovich, D. & Thallinger, G., 2012, 11th European Conference on Computational Biology (ECCB 12) - List of accepted poster abstacts. ., p. 2-2

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

2014

The Sphagnum microbiome supports bog ecosystem functioning under extreme conditions.

Bragina, A., Oberauner-Wappis, L., Zachow, C., Halwachs, B., Thallinger, G., Müller, H. & Berg, G., 2014, In : Molecular ecology. 23, 18, p. 4489-4851

Research output: Contribution to journalArticleResearchpeer-review

2018

Bioinformatic Analysis of FXR related ChIP-seq data

Panzitt, K., Wagner, M. & Thallinger, G., Aug 2018.

Research output: Contribution to conferencePosterResearchpeer-review

Bioinformatic Analysis of FXR related ChIP-seq data

Panzitt, K., Wagner, M. & Thallinger, G., Sep 2018.

Research output: Contribution to conferencePosterResearchpeer-review

2014

Stenotrophomonas comparative genomics reveals genes and functions that differentiate beneficial and pathogenic bacteria

Alavi, M., Starcher, M., Thallinger, G., Zachow, C., Müller, H. & Berg, G., 2014, In : BMC Genomics . 151, p. 482-482

Research output: Contribution to journalArticleResearchpeer-review

2017

Comprehensive Analysis of Genomic Data for 16 CHO Cell Lines to Investigate the (In)stability of the CHO Genome

Feichtinger, J., Fischer, C., Hernandez, I., Dhiman, H., Borth, N. & Thallinger, G., 2017.

Research output: Contribution to conferencePosterResearch

2014

A novel stable isotope labelling assisted workflow for improved untargeted LC-HRMS based metabolomics research

Bueschl, C., Kluger, B., Lemmens, M., Adam, G., Wiesberger, G., Maschietto, V., Marocco, A., Strauss, J., Bödi, S., Thallinger, G., Krska, R. & Schuhmacher, R., 2014, In : Metabolomics. 10, 4, p. 754-769

Research output: Contribution to journalArticleResearchpeer-review

Comparative Genome Analysis of Campylobacter fetus Subspecies Revealed Horizontally Acquired Genetic Elements Important for Virulence and Niche Specificity

Kienesberger, S., Sprenger, H., Wolfgruber, S., Halwachs, B., Thallinger, G., Perez-Perez, G. I., Blaser, M. J., Zechner, E. & Gorkiewicz, G., 2014, In : PLoS ONE. 9, 1, p. e85491-e85491

Research output: Contribution to journalArticleResearchpeer-review

2017

The Human Gastric Microbiome Is Predicated upon Infection with Helicobacter pylori

Klymiuk, I., Bilgilier, C., Stadlmann, A., Thannesberger, J., Kastner, M-T., Högenauer, C., Püspök, A., Biowski-Frotz, S., Schrutka-Kölbl, C., Thallinger, G. G. & Steininger, C., 14 Dec 2017, In : Frontiers in Microbiology . 8, 2508.

Research output: Contribution to journalArticleResearchpeer-review

2015

Deriving patterns of gastrointestinal dysbiosis

Halwachs, B., Högenauer, C., Thallinger, G. & Gorkiewicz, G., 10 Jun 2015.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

miR-199a and miR-497 Are Associated with Better Overall Survival due to Increased Chemosensitivity in Diffuse Large B-Cell Lymphoma Patients.

Troppan, K., Wenzl, K., Pichler, M., Pursche, B., Schwarzenbacher, D., Feichtinger, J., Thallinger, G., Beham-Schmid, C., Neumeister, P. & Deutsch, A. J., 2015, In : International Journal of Molecular Sciences . 16, 8, p. 18077-18095

Research output: Contribution to journalArticleResearchpeer-review

2012

Final Report, Bioinformatics Integration Network III

Thallinger, G., Stark, A., Novatchkova, M., von Haeseler, A., Hofacker, I., Djinovic-Carugo, K., Bennett, K. L., Baumgartner, C., Colinge, J. & Trajanoski, Z., 2012, .

Research output: Book/ReportOther reportResearch

2015

Deriving patterns of gastrointestinal dysbiosis

Halwachs, B., Thallinger, G., Högenauer, C. & Gorkiewicz, G., 2015.

Research output: Contribution to conferencePosterResearch

Decontaminator: detection and removal of contaminating sequences of unknown source

Halwachs, B., Snajder, R., Gorkiewicz, G. & Thallinger, G., 2015.

Research output: Contribution to conferencePosterResearch

2012

Comparison of Osmotic Conditions Based on Integrative Analysis Methods for -omics Data

Tomescu, O. A., Dragosits, M., Graf, A., Gasser, B., Mattanovich, D. & Thallinger, G., 2012.

Research output: Contribution to conferencePosterResearch

2017

MetExtract II: A Software Suite for Stable Isotope-Assisted Untargeted Metabolomics

Bueschl, C., Kluger, B., Neumann, N. K. N., Doppler, M., Maschietto, V., Thallinger, G. G., Meng-Reiterer, J., Krska, R. & Schuhmacher, R., 5 Sep 2017, In : Analytical Chemistry. 89, 17, p. 9518-9526

Research output: Contribution to journalArticleResearchpeer-review

2013

Integrative Analysis Methods. A study based on P. falciparum mRNA and protein data.

Tomescu, O. A., Mattanovich, D. & Thallinger, G., 2013.

Research output: Contribution to conferencePosterResearch

2011

SnoWMAn: high throughput phylotyping

Stocker, G., Snajder, R., Halwachs, B., Trajanoski, S., Gorkiewicz, G. & Thallinger, G., 2011.

Research output: Contribution to conferencePosterResearch

2014

From ecology to function: exploring the moss microbiome as a biotechnological resource

Müller, C. A., Bragina, A., Oberauner-Wappis, L., Halwachs, B., Zachow, C., Thallinger, G. & Berg, G., 2014.

Research output: Contribution to conferencePosterResearch

2015

Deriving patterns of gastrointestinal dysbiosis

Halwachs, B., Thallinger, G., Högenauer, C. & Gorkiewicz, G., 2015.

Research output: Contribution to conferencePosterResearch

2011

Population dynamics of the colonic microbiota in response to osmotic diarrhea

Gorkiewicz, G., Thallinger, G., Trajanoski, S., Stocker, G., Hinterleitner, T., Gülly, C. & Högenauer, C., 2011.

Research output: Contribution to conferencePosterResearch

2017

Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily

Lanfranchi, E., Pavkov-Keller, T., Koehler, E-M., Diepold, M., Steiner, K., Darnhofer, B., Hartler, J., Van Den Bergh, T., Joosten, H-J., Gruber-Khadjawi, M., Thallinger, G. G., Birner-Gruenberger, R., Gruber, K., Winkler, M. & Glieder, A., 10 May 2017, In : Scientific Reports. 7, 46738.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
2012

Lipid Data Analyzer: unattended identification and quantitation of lipids in LC‐MS data

Hartler, J., Trötzmüller, M., Chitraju, C., Spener, F., Köfeler, H. & Thallinger, G., 21 Sep 2012.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

2014

LDA 2 - flexible lipid identification for LC-MSn data

Hartler, J., Triebl, A., Trötzmüller, M., Ziegl, A., Köfeler, H. & Thallinger, G., 22 Sep 2014.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

2017

Deciphering lipid structures based on platform-independent decision rules

Hartler, J., Triebl, A., Ziegl, A., Trötzmüller, M., Rechberger, G. N., Zeleznik, O. A., Zierler, K. A., Torta, F., Cazenave-Gassiot, A., Wenk, M. R., Fauland, A., Wheelock, C. E., Armando, A. M., Quehenberger, O., Zhang, Q., Wakelam, M. JO., Haemmerle, G., Spener, F., Köfeler, H. C. & Thallinger, G. G., 13 Sep 2017.

Research output: Contribution to conferencePosterResearchpeer-review

2014

The mzTab Data Exchange Format: communicating MS-based proteomics and metabolomics experimental results to a wider audience

Griss, J., Jones, A. R., Sachsenberg, T., Walzer, M., Laurent, G., Hartler, J., Thallinger, G., Salek, R. M., Steinbeck, C., Nadin, N., Cox, J., Neumann, S., Fan, J., Reisinger, F., Qing-Wei, X., del Toro, N., Perez-Riverol, Y., Ghali, F., Bandeira, N., Xenarios, I. & 3 othersKohlbacher, O., Vizcaino, J. A. & Henning, H., 2014, In : Molecular & cellular proteomics. 13, 10, p. 2765-2775

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Metabolic Profiling mittels LC-MS als Strategie für die Identifizierung von Wirksubstanzen aus Arzneidrogen

Ortmann, S., Monschein, M., Hartler, J., Zhao, Y. M., Miao, J., Thallinger, G. & Bauer, R., 2014.

Research output: Contribution to conferencePosterResearch

2012

Lipidomic analysis of lipid droplets from murine hepatocytes reveals distinct signatures for nutritional stress

Chitraju, C., Trötzmüller, M., Hartler, J., Wolinski, H., Thallinger, G. G., Lass, A., Zechner, R., Zimmermann, R., Köfeler, H. C. & Spener, F., 2012, In : Journal of lipid research. 53, 10, p. 2141-2152

Research output: Contribution to journalArticleResearchpeer-review

2015

Lipid Data Analyzer (LDA) 2: Flexible and Automatic Identification of Lipid Structures in High-Throughput LC-MSn Data from Various Instruments

Hartler, J., Triebl, A., Trötzmüller, M., Ziegl, A., Rechberger, G., Spener, F., Köfeler, H. & Thallinger, G., 2015.

Research output: Contribution to conferencePosterResearch

2012

Lipid Data Analyzer: automated identification and quantitation of lipid species in LC-MS data

Hartler, J., Trötzmüller, M., Fauland, A., Büschl, C., Schuhmacher, R., Köfeler, H. & Thallinger, G., 2012.

Research output: Contribution to conferencePosterResearch

2013

The impact of genetic stress by ATGL deficiency on the lipidome of lipid droplets from murine hepatocytes

Chitraju, C., Trötzmüller, M., Hartler, J., Wolinski, H., Thallinger, G., Haemmerle, G., Zechner, R., Zimmermann, R., Köfeler, H. & Spener, F., 2013, In : Journal of lipid research. 54, 8, p. 2185-2194

Research output: Contribution to journalArticleResearchpeer-review

Open Access
2012

10th Austrian Proteomic Research Symposium - Special Focus on Functional Proteomics

Hartler, J. (ed.), Birner-Grünberger, R. (ed.), Gesslbauer, B. (ed.) & Thallinger, G. (ed.), 2012, .

Research output: Book/ReportAnthologyResearch

2013

Bioinformatics tools and challenges in structural analysis of lipidomics MS/MS data

Hartler, J., Tharakan, R., Köfeler, H., Graham, D. & Thallinger, G., 2013, In : Briefings in Bioinformatics. 14, 3, p. 375-390

Research output: Contribution to journalArticleResearchpeer-review

A Bioinformatics Approach for Integrated Transcriptomic and Proteomic Comparative Analyses of Model and Non-sequenced Anopheline Vectors of Human Malaria Parasites.

Ubaida Mohien, C., Colquhoun, D., Mathias, D., Gibbons, J., Armistead, J., Rodriguez, M., Rodriguez, M., Edwards, N., Hartler, J., Thallinger, G., Graham, D., Martinez-Barnetche, J., Rokas, A. & Dinglasan, R., 2013, In : Molecular & cellular proteomics. 12, 1, p. 120-131

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
2014

Metabolic Profiling of Lonicera Species for the Identification of Constituents Relevant for Inhibition of NO production in LPS-/IFN-γ-stimulated RAW 264.7 mouse macrophages

Ortmann, S., Monschein, M., Hartler, J., Zhao, Y. M., Miao, J., Thallinger, G. & Bauer, R., 2014.

Research output: Contribution to conferencePosterResearch

2012

Correlation Matrices for the Integrative Analysis of Transcriptome and Metabolome Data Sets

Kopp, W. & Thallinger, G., 2012.

Research output: Contribution to conferencePosterResearch

Complete mitochondrial DNA sequences of the threadfin cichlid (Petrochromis trewavasae) and the blunthead cichlid (Tropheus moorii) and patterns of mitochondrial genome evolution in cichlid fishes

Fischer, C., Koblmüller, S., Gülly, C., Schlötterer, C., Sturmbauer, C. & Thallinger, G., 2012.

Research output: Contribution to conferencePosterResearch

2013

Metagenomics to explore function and diversity of the Alpine bog microbiome

Oberauner, L., Müller, H., Zachow, C., Thallinger, G., Bragina, A. & Berg, G., 2013.

Research output: Contribution to conferencePosterResearch