Jan Egger

Dr.rer.physiol. Priv.-Doz. Dr.rer.nat.

20132022
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Research Output 2014 2019

A Client/Server Based Online Environment for Manual Segmentation of Medical Images

Wild, D., Weber, M. & Egger, J., 2019, The 23rd Central European Seminar on Computer Graphics (CESCG). p. 1-8

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Servers
Medical image processing
Web browsers
Medical imaging
Fault tolerance

A Client/Server based Online Environment for the Calculation of Medical Segmentation Scores

Weber, M., Wild, D., Wallner, J. & Egger, J., 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). p. 3463-3467 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Image segmentation
Servers
Medical imaging
Radiology
Tumors

Adaptive Scan Strategies for fetal MRI Imaging using Slice to Volume Techniques

Kainz, B., Malamateniou, C., Ferrazzi, G., Murgasova, M., Egger, J., Keraudren, K., Rutherford, M., Hajnal, J. & Rueckert, D., 2015, (Accepted/In press) IEEE International Symposium on Biomedical Imaging (ISBI): From Nano to Macro. .

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Algorithm guided outlining of 105 pancreatic cancer liver metastases in Ultrasound

Hann, A., Bettac, L., Haenle, M. M., Graeter, T., Berger, A. W., Dreyhaupt, J., Schmalstieg, D., Zoller, W. G. & Egger, J., 6 Oct 2017, In : Scientific reports. 7, 1, p. 12779

Research output: Contribution to journalArticleResearchpeer-review

Liver Neoplasms
Pancreatic Neoplasms
Neoplasm Metastasis
Liver

Algorithmic evaluation of lower jawbone segmentations

Egger, J., Hochegger, K., Gall, M., Chen, X., Reinbacher, K., Schwenzer-Zimmerer, K., Schmalstieg, D. & Wallner, J., 1 Feb 2017, Proc. SPIE Medical Imaging. Orlando, FL, USA

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

A Marker-Less Registration Approach for Mixed Reality–Aided Maxillofacial Surgery: a Pilot Evaluation

Pepe, A., Trotta, G. F., Mohr-Ziak, P., Gsaxner, C., Wallner, J., Bevilacqua, V. & Egger, J., 4 Sep 2019, In : Journal of digital imaging. 32, 6, p. 1008-1018 11 p.

Research output: Contribution to journalArticleResearchpeer-review

Oral Surgery
Surgery
Tissue
Helmet mounted displays
Operating rooms

AR (augmented reality)-Paradigmenwechsel im Therapiedesign

Reinbacher, K., Wallner, J., Egger, J., Voglreiter, P., Pau, M., Zrnc, T., Feichtinger, M. & Schwenzer-Zimmerer, K., 2016.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

A Review on Multiplatform Evaluations of Semi-Automatic Open-Source Based Image Segmentation for Cranio-Maxillofacial Surgery

Wallner, J., Schwaiger, M., Hochegger, K. M., Gsaxner, C., Zemann, W. & Egger, J., 2019, In : Computer methods and programs in biomedicine. 182, 23 p., 105102.

Research output: Contribution to journalArticleResearchpeer-review

Oral Surgery
Image segmentation
Software packages
Surgery
Licensure

A semi-automatic computer-aided method for surgical template design

Chen, X., Xu, L., Yang, Y. & Egger, J., 2016, In : Scientific reports. p. 1-18

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Augmented Reality (AR)-guided intraoperative Navigation

Egger, J., 2017.

Research output: Contribution to conferencePosterResearch

Automated Computer-aided Design of Cranial Implants Using a Deep Volumetric Convolutional Denoising Autoencoder

Morais, A., Egger, J. & Alves, V., 2019, New Knowledge in Information Systems and Technologies: WorldCIST'19 2019. Rocha, Á., Adeli, H., Reis, L. & Costanzo, S. (eds.). Cham: Springer, Vol. 1. p. 151-160 (Advances in Intelligent Systems and Computing; vol. 932).

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Computer aided design
Brain
Experiments
Defects
Processing

Automatic urinary bladder segmentation in CT images using deep learning

Gsaxner, C., 2017

Research output: ThesisMaster's ThesisResearch

A VR-based surgical simulation system using patient- specific physical computing model

Egger, J., 2017.

Research output: Contribution to conferencePosterResearchpeer-review

Chemotherapeutic agents eligible for prior dosing in pancreatic cancer patients requiring hemodialysis: A systematic review

Hann, A., Nosalski, E., Hermann, P. C., Egger, J., Seufferlein, T. & Keller, F., 1 Aug 2018, In : Clinical Nephrology. 90, 2, p. 125-141 17 p.

Research output: Contribution to journalArticleResearchpeer-review

Pancreatic Neoplasms
Renal Dialysis
oxaliplatin
irinotecan
gemcitabine

Clinical Evaluation of Mandibular Bone Segmentation

Egger, J., Hochegger, K., Gall, M., Reinbacher, K., Schwenzer-Zimmerer, K., Wallner, J. & Schmalstieg, D., 1 Aug 2016, Proc. IEEE Engineering in Medicine and Biology Society (EMBC'16), Posters. Orlando, FL, USA: IEEE Computer Society

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Clinical evaluation of semi-automatic open-source algorithmic software segmentation of the mandibular bone: Practical feasibility and assessment of a new course of action

Wallner, J., Hochegger, K., Chen, X., Mischak, I., Reinbacher, K., Pau, M., Zrnc, T., Schwenzer-Zimmerer, K., Zemann, W., Schmalstieg, D. & Egger, J., 2018, In : PLoS ONE. 13, 5

Research output: Contribution to journalArticleResearchpeer-review

Open Access
Bone
Software
Visualization
bones
Personnel

Computed tomography data collection of the complete human mandible and valid clinical ground truth models

Wallner, J., Mischak, I. & Egger, J., 2019, In : Scientific Data . 6, 14 p., 190003.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
Computed Tomography
Tomography
Computerized tomography
Valid
Segmentation

Computer-aided implant design for the restoration of cranial defects

Chen, X., Xu, L., Li, X. & Egger, J., 23 Jun 2017, In : Scientific reports. 7, 1, p. 4199

Research output: Contribution to journalArticleResearchpeer-review

Computer-Aided Design
Software
Efficiency

Computer-Aided Planning and Reconstruction of Cranial 3D Implants

Gall, M., Li, X., Chen, X., Schmalstieg, D. & Egger, J., 1 Aug 2016, Proc. IEEE Engineering in Medicine and Biology Society (EMBC'16). Orlando, FL, USA

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Computer-Aided Planning of Cranial 3D Implants

Gall, M., Chen, X., Schmalstieg, D. & Egger, J., 1 Jun 2016, In : International Journal of Computer Assisted Radiology and Surgery. 11, Suppl 1, p. 187

Research output: Contribution to journalArticleResearchpeer-review

Computer-aided position planning of miniplates to treat facial bone defects

Egger, J., Wallner, J., Gall, M., Chen, X., Schwenzer-Zimmerer, K., Reinbacher, K. & Schmalstieg, D., 2017, In : PLoS ONE. 12, 8, p. e0182839

Research output: Contribution to journalArticleResearchpeer-review

Facial Bones
Bone
surgeons
planning
bones

Computer-aided Reconstruction of Facial Defects

Gall, M., Wallner, J., Schwenzer-Zimmerer, K., Schmalstieg, D., Reinbacher, K. & Egger, J., 1 Aug 2016.

Research output: Contribution to conferencePosterResearchpeer-review

Depth-Awareness in a System for Mixed-Reality Aided Surgical Procedures

Sylos Labini, M., Gsaxner, C., Pepe, A., Wallner, J., Egger, J. & Bevilacqua, V., 2019, Intelligent Computing Methodologies - 15th International Conference, ICIC 2019, Proceedings. Huang, Z-K., Hussain, A. & Huang, D-S. (eds.). Springer Verlag Heidelberg, p. 716-726 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11645 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Mixed Reality
Surgery
Operating rooms
Navigation
Sensing

Development of a computer-aided design software for dental splint in orthognathic surgery

Chen, X., Li, X., Xu, L., Sun, Y., Politis, C. & Egger, J., 14 Dec 2016, In : Scientific reports. 6, p. 38867

Research output: Contribution to journalArticleResearchpeer-review

Orthognathic Surgery
Computer-Aided Design
Splints
Tooth
Software

Development of a surgical navigation system based on augmented reality using an optical see-through head-mounted display

Chen, X., Xu, L., Wang, Y., Wang, H., Wang, F., Zeng, X., Wang, Q. & Egger, J., 2015, In : Journal of biomedical informatics. 55, p. 124-131

Research output: Contribution to journalArticleResearchpeer-review

Evaluation of an Interactive Segmentation Algorithm using Ultrasound Images of Pancreatic Cancer Liver Metastases

Egger, J., 2017.

Research output: Contribution to conferencePosterResearchpeer-review

Exploit 18F-FDG enhanced urinary bladder in PET data for deep learning ground truth generation in CT scans

Gsaxner, C., Pfarrkirchner, B., Lindner, L., Jakse, N., Wallner, J., Schmalstieg, D. & Egger, J., 12 Mar 2018, Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE Press, SPIE - The International Society for Optical Engineering

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Exploit fully automatic low-level segmented PET data for training high-level deep learning algorithms for the corresponding CT data

Gsaxner, C., Roth, P. M., Egger, J. & Wallner, J., 2019, In : PLoS ONE. p. e0212550

Research output: Contribution to journalArticleResearchpeer-review

neural networks
Learning algorithms
Urinary Bladder
Positron emission tomography
learning

Feasibility of alternating induction and maintenance chemotherapy in pancreatic cancer

Hann, A., Bohle, W., Egger, J. & Zoller, W., 31 Jan 2017, In : Scientific reports. 7, 7 p., 41549.

Research output: Contribution to journalArticleResearchpeer-review

Maintenance Chemotherapy
Induction Chemotherapy
Pancreatic Neoplasms
Adenocarcinoma
Therapeutics

Free thoracodorsal, perforator-scapular flap based on the angular artery (TDAP-Scap-aa): Clinical experiences and description of a novel technique for single flap reconstruction of extensive oromandibular defects

Pau, M., Wallner, J., Feichtinger, M., Schwaiger, M., Egger, J., Cambiaso-Daniel, J., Winter, R., Jakse, N. & Zemann, W., 2019, In : Journal of Cranio-Maxillofacial Surgery. 47, 10, p. 1617-1625

Research output: Contribution to journalArticleResearchpeer-review

Perforator Flap
Arteries
Bone and Bones
Tissue Donors
Skin

Fully Convolutional Mandible Segmentation on a valid Ground-Truth Dataset

Egger, J., Pfarrkirchner, B., Gsaxner, C., Lindner, L., Schmalstieg, D. & Wallner, J., 2018, Proceedings IEEE Engineering in Medicine and Biology Conference (EMBC).

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Global Illumination Rendering for High-Quality Volume Visualization in the Medical Domain

Voglreiter, P., Wallner, J., Reinbacher, K., Schwenzer-Zimmerer, K., Schmalstieg, D. & Egger, J., 2015, face 2 face - science meets art.

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Global Illumination Rendering for High-Quality Volume Visualization in the Medical Domain

Voglreiter, P., Wallner, J., Reinbacher, K., Schwenzer-Zimmerer, K., Schmalstieg, D. & Egger, J., 2015.

Research output: Contribution to conferencePosterResearch

HTC Vive MeVisLab integration via OpenVR for medical applications

Egger, J., Gall, M., Wallner, J., Boechat, P., Hann, A., Li, X., Chen, X. & Schmalstieg, D., 2017, In : PLoS ONE. 12, 3, p. e0173972

Research output: Contribution to journalArticleResearchpeer-review

Medical applications
Virtual reality
Libraries
medical equipment
Equipment and Supplies

Image-guided real-time-segmentation of the mandibular bone: Can a simple Segmentation approach provide a satisfying result for a practicable use?

Wallner, J., Reinbacher, K., Egger, J., Pau, M., Zemann, W., Zrnc, T., Schmalstieg, D. & Schwenzer-Zimmerer, K., 2016.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Improvement in advanced pancreatic cancer survival with novel chemotherapeutic strategies - experience of a community based hospital

Hann, A., Bohle, W., Egger, J. & Zoller, W. G., Oct 2016, In : Zeitschrift für Gastroenterologie. 54, 10, p. 1138-1142 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Community Hospital
Pancreatic Neoplasms
Survival
gemcitabine
Adenocarcinoma

In-depth Assessment of an Interactive Graph-based Approach for the Segmentation for Pancreatic Metastasis in Ultrasound Acquisitions of the Liver with two Specialists in Internal Medicine

Egger, J., Chen, X., Bettac, L., Haenle, M. M., Graeter, T., Zoller, W., Schmalstieg, D. & Hann, A., 2017.

Research output: Contribution to conferencePaperResearchpeer-review

In-depth Multicenter Workflow Analysis of Liver Tumor Ablations for the Development of a Novel Computer-aided Software Tool

Egger, J., Voglreiter, P., Dokter, M., Hofmann, M., Busse, H., Seider, D., Brandmaier, P., Rautio, R., Zettel, G., Schmerböck, B., van Amerongen, M., Jenniskens, S., Kolesnik, M., Kainz, B., Sequeiros, R. B., Portugaller, H., Stiegler, P., Futterer, J., Schmalstieg, D. & Moche, M., 2015.

Research output: Contribution to conferencePosterResearch

In-depth Multicenter Workflow Analysis of Liver Tumor Ablations for the Development of a Novel Computer-aided Software Tool

Egger, J., Voglreiter, P., Dokter, M., Hofmann, M., Busse, H., Seider, D., Brandmaier, P., Rautio, R., Zettel, G., Schmerböck, B., van Amerongen, M., Jenniskens, S., Kolesnik, M., Kainz, B., Sequeiros, R. B., Portugaller, H., Stiegler, P., Futterer, J., Schmalstieg, D. & Moche, M., 2015.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Integration of the HTC Vive into the Medical Platform MeVisLab

Egger, J., Gall, M., Hann, A., Li, X., Chen, X., Schmalstieg, D., Boechat de Almeida Germano, P. & Wallner, J., 1 Feb 2017, Proc. SPIE Medical Imaging. Orlando, FL, USA

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Integration of the HTC Vive into the Medical Platform MeVisLab

Egger, J., 2017.

Research output: Contribution to conferencePosterResearchpeer-review

Interactive algorithm for the measurement of pancreatic cancer liver metastases in ultrasound

Egger, J., 2017.

Research output: Contribution to conferencePosterResearchpeer-review

Interactive-cut: Real-time feedback segmentation for translational research

Egger, J., Lüddemann, T., Schwarzenberg, R., Freisleben, B. & Nimsky, C., 2014, In : Computerized medical imaging and graphics. 38, 4, p. 285-295

Research output: Contribution to journalArticleResearchpeer-review

Interactive Outlining of Pancreatic Cancer Liver Metastases in Ultrasound Images

Egger, J., Schmalstieg, D., Chen, X., Zoller, W. G. & Hann, A., 18 Apr 2017, In : Scientific reports. 7, 1, p. 892

Research output: Contribution to journalArticleResearchpeer-review

Liver Neoplasms
Pancreatic Neoplasms
Neoplasm Metastasis
Liver
Costs and Cost Analysis

Interactive Planning of Miniplates

Gall, M., Reinbacher, K., Stanzel, J., Chen, X., Schwenzer-Zimmerer, K., Wallner, J., Schmalstieg, D. & Egger, J., 1 Feb 2017, Proc. SPIE Medical Imaging. Orlando, FL, USA

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Interactive Planning of Miniplates

Egger, J., 2017.

Research output: Contribution to conferencePosterResearchpeer-review

Interactive reconstructions of cranial 3D implants under MeVisLab as an alternative to commercial planning software

Egger, J., Gall, M., Tax, A., Ücal, M., Zefferer, U., Li, X., von Campe, G., Schäfer, U., Schmalstieg, D. & Chen, X., 2017, In : PLoS ONE. 12, 3, p. e0172694

Research output: Contribution to journalArticleResearchpeer-review

prototypes
computer-aided design
Software
planning
Workflow

Interactive Volumetry Of Liver Ablation Zones

Egger, J., Busse, H., Brandmaier, P., Seider, D., Gawlitza, M., Strocka, S., Voglreiter, P., Dokter, M., Hofmann, M., Kainz, B., Hann, A., Chen, X., Alhonnoro, T., Pollari, M., Schmalstieg, D. & Moche, M., 2015, In : Scientific reports. 5, 15373, p. 1-18

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Interaktive Planung von Gesichtsimplantaten

Gall, M., Reinbacher, K., Schwenzer-Zimmerer, K., Schmalstieg, D., Egger, J. & Wallner, J., 1 Mar 2017, Proc. Bildverarbeitung fuer die Medizin (BVM). Heidelberg, Germany

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review