Gerhard Thallinger

Dipl.-Ing. Dr.techn.

20002020
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Research Output 2000 2019

2013

Differential RNA‐sequencing (dRNA‐seq) of Campylobacter fetus subspecies.

Gorkiewicz, G., Halwachs, B., Kienesberger, S., Förstner, K. U., Sharma, C., Thallinger, G., Sprenger, H. & Zechner, E., 2013.

Research output: Contribution to conferencePosterResearch

Integrative Analysis Methods. A study based on P. falciparum mRNA and protein data.

Tomescu, O. A., Mattanovich, D. & Thallinger, G., 2013.

Research output: Contribution to conferencePosterResearch

Integrative Analysis Methods. A study based on P. falciparum mRNA and protein data.

Tomescu, O. A., Mattanovich, D. & Thallinger, G., 2013.

Research output: Contribution to conferencePosterResearch

Integrative Analysis of -omics Data: A Method Comparison

Tomescu, O. A., Mattanovich, D. & Thallinger, G., 2013, Biomedizinische Technik / Biomedical Engineering. Walter de Gruyter (WdG), p. 58-59 ((Suppl 1)).

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Metagenomics to explore function and diversity of the Alpine bog microbiome

Oberauner, L., Müller, H., Zachow, C., Thallinger, G., Bragina, A. & Berg, G., 2013.

Research output: Contribution to conferencePosterResearch

More than cell dust: microparticles isolated from cerebrospinal fluid of brain injured patients are messengers carrying mRNAs, miRNAs and proteins

Patz, S., Trattnig, C., Grünbacher, G., Ebner, B., Gülly, C., Novak, A., Rinner, B., Leitinger, G., Absenger, M., Tomescu, O. A., Thallinger, G., Fasching, U., Wissa, S., Archelos-Garcia, J-J. & Schäfer, U., 2013, In : Journal of neurotrauma. 30, 14, p. 1232-1242

Research output: Contribution to journalArticleResearchpeer-review

New horseradish peroxidase isoenzymes and their production in Pichia pastoris

Krainer, F., Näätsaari, L., Thallinger, G., Herwig, C. & Spadiut, O., 2013.

Research output: Contribution to conferencePosterResearch

Sequencing strategies for metagenomes in enzyme discovery

Halwachs, B., Oberauner-Wappis, L., Müller, H., Berg, G. & Thallinger, G., 2013.

Research output: Contribution to conferencePosterResearch

The impact of genetic stress by ATGL deficiency on the lipidome of lipid droplets from murine hepatocytes

Chitraju, C., Trötzmüller, M., Hartler, J., Wolinski, H., Thallinger, G., Haemmerle, G., Zechner, R., Zimmermann, R., Köfeler, H. & Spener, F., 2013, In : Journal of lipid research. 54, 8, p. 2185-2194

Research output: Contribution to journalArticleResearchpeer-review

Open Access

Unique functional diversity within Sphagnum peat bogs

Bragina, A., Oberauner-Wappis, L., Halwachs, B., Thallinger, G., Berg, C., Müller, H. & Berg, G., 2013.

Research output: Contribution to conferencePosterResearch

2012

10th Austrian Proteomic Research Symposium - Special Focus on Functional Proteomics

Hartler, J. (ed.), Birner-Grünberger, R. (ed.), Gesslbauer, B. (ed.) & Thallinger, G. (ed.), 2012, .

Research output: Book/ReportAnthologyResearch

A Sequence Based Validation of Gene Expression Microarray Data

Thallinger, G., Obermayr, E., Charoentong, P., Tong, D., Trajanoski, Z. & Zeillinger, R., 2012, In : American journal of bioinformatics. 1, 1, p. 1-9

Research output: Contribution to journalArticleResearchpeer-review

A sequence comparison and gene expression data integration add-on for the Pathway Tools software

Krempl, P., Mairhofer, J., Striedner, G. & Thallinger, G., 2012, In : Bioinformatics. 28, 17, p. 2283-2284

Research output: Contribution to journalArticleResearchpeer-review

Autoimmune response following influenza vaccination

Perdan-Pirkmajer, K., Thallinger, G., Snoj, N., Cucnik, S., Žigon, P., Kveder, T., Logar, D., Praprotnik, S., Tomsic, M., Sodin-Semrl, S. & Ambrozic, A., 2012, In : Lupus. 21, 2, p. 175-183

Research output: Contribution to journalArticleResearchpeer-review

Automated and Reliable Detection and Quantitation of Low Abundant Lipid Species and Other Metabolites in LC-MS Data

Hartler, J., Trötzmüller, M., Fauland, A., Büschl, C., Schuhmacher, R., Köfeler, H. & Thallinger, G., 2012.

Research output: Contribution to conferencePosterResearch

Comparison of Osmotic Conditions Based on Integrative Analysis Methods for Omics Data

Tomescu, O. A., Dragosits, M., Graf, A., Gasser, B., Mattanovich, D. & Thallinger, G., 24 Sep 2012.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Comparison of Osmotic Conditions Based on Integrative Analysis Methods for Omics Data

Tomescu, O. A., Dragosits, M., Graf, A., Gasser, B., Mattanovich, D. & Thallinger, G., 2012, 10th Austrian Proteomic Research Symposium (APRS) - Special Focus on Functional Proteomics. ., p. 9-9

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Comparison of Osmotic Conditions Based on Integrative Analysis Methods for -omics Data

Tomescu, O. A., Dragosits, M., Graf, A., Gasser, B., Mattanovich, D. & Thallinger, G., 2012.

Research output: Contribution to conferencePosterResearch

Complete mitochondrial DNA sequences of the threadfin cichlid (Petrochromis trewavasae) and the blunthead cichlid (Tropheus moorii) and patterns of mitochondrial genome evolution in cichlid fishes

Fischer, C., Koblmüller, S., Gülly, C., Schlötterer, C., Sturmbauer, C. & Thallinger, G., 2012.

Research output: Contribution to conferencePosterResearch

Correlation Matrices for the Integrative Analysis of Transcriptome and Metabolome Data Sets

Kopp, W. & Thallinger, G., 2012.

Research output: Contribution to conferencePosterResearch

Final Report, Bioinformatics Integration Network III

Thallinger, G., Stark, A., Novatchkova, M., von Haeseler, A., Hofacker, I., Djinovic-Carugo, K., Bennett, K. L., Baumgartner, C., Colinge, J. & Trajanoski, Z., 2012, .

Research output: Book/ReportOther reportResearch

Functional Categories Associated with Clusters of Genes that are Co-Expressed across the NCI-60 Cancer Cell Lines.

Zeeberg, B. R., Reinhold, W., Snajder, R., Thallinger, G., Kohn, K. W., Pommier, Y. & Weinstein, J. N., 2012, In : PLoS ONE. 7, 1, p. e30317-

Research output: Contribution to journalArticleResearchpeer-review

Genomic sequencing of two members of the eco-morphologically diverse cichlid tribe Tropheini

Sturmbauer, C., Gülly, C., Schlötterer, C., Trajanoski, S., Fischer, C. & Thallinger, G., 21 Sep 2012.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

High-throughput characterization and comparison of microbial communities

Halwachs, B., Gorkiewicz, G. & Thallinger, G., 2012, Computational Medicine. Tomlin, C. J. & Greenstreet, M. R. (eds.). 1 ed. Wien: Springer, p. 37-57

Research output: Chapter in Book/Report/Conference proceedingChapterResearch

High-Throughput Characterization of Fungal Communities

Halwachs, B. & Thallinger, G., 2012.

Research output: Contribution to conferencePosterResearch

High-Throughput Characterization of Fungal Communities

Halwachs, B. & Thallinger, G., 2012.

Research output: Contribution to conferencePosterResearch

Integrative Analysis Methods for Omics Data

Tomescu, O. A., Dragosits, M., Graf, A., Gasser, B., Mattanovich, D. & Thallinger, G., 2012.

Research output: Contribution to conferencePosterResearch

Integrative Analysis Methods for Omics Data

Tomescu, O. A., Dragosits, M., Graf, A., Gasser, B., Mattanovich, D. & Thallinger, G., 2012, 11th European Conference on Computational Biology (ECCB 12) - List of accepted poster abstacts. ., p. 2-2

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

International cohort study of 73 anti-Ku positive patients: association of p70/p80 anti-Ku antibodies with joint/bone features and differentiation of disease populations using principle component analysis

Lakota, K., Thallinger, G., Sodin-Semrl, S., Rozman, B., Ambrozic, A., Tomsic, M., Praprotnik, S., Cucnik, S., Mrak-Poljsak, K., Ceribelli, A., Cavazzana, I., Franceschini, F., Vencovsky, J., Czirják, L., Varjú, C., Steiner, G., Aringer, M., Stamenkovic, B., Distler, O., Matucci-Cerinic, M. & 1 othersKveder, T., 2012, In : Arthritis Research & Therapy. 14, 1, p. R2-R2

Research output: Contribution to journalArticleResearchpeer-review

Lipid Data Analyzer: automated identification and quantitation of lipid species in LC-MS data

Hartler, J., Trötzmüller, M., Fauland, A., Chitraju, C., Spener, F., Köfeler, H. & Thallinger, G., 6 Mar 2012.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Lipid Data Analyzer: automated identification and quantitation of lipid species in LC-MS data

Hartler, J., Trötzmüller, M., Fauland, A., Büschl, C., Schuhmacher, R., Köfeler, H. & Thallinger, G., 2012.

Research output: Contribution to conferencePosterResearch

Lipid Data Analyzer: unattended identification and quantitation of lipids in LC‐MS data

Hartler, J., Trötzmüller, M., Chitraju, C., Spener, F., Köfeler, H. & Thallinger, G., 21 Sep 2012.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Lipidomic analysis of lipid droplets from murine hepatocytes reveals distinct signatures for nutritional stress

Chitraju, C., Trötzmüller, M., Hartler, J., Wolinski, H., Thallinger, G., Lass, A., Zechner, R., Zimmermann, R., Köfeler, H. & Spener, F., 2012, In : Journal of lipid research. 53, 10, p. 2141-2152

Research output: Contribution to journalArticleResearchpeer-review

Lipidomics, Mass Spectrometry, and Bioinformatics

Hartler, J., Köfeler, H., Baker, C., Tharakan, R. & Thallinger, G., 2012, Computational Medicine. 1 ed. Wien: Springer, p. 93-109

Research output: Chapter in Book/Report/Conference proceedingChapterResearch

Metagenomics to explore the ecology and biotechnological potential of the Alpine bog microbiome

Oberauner, L., Zachow, C., Müller, H., Thallinger, G., Bragina, A. & Berg, G., 2012.

Research output: Contribution to conferencePosterResearch

Metagenomics to explore the ecology and biotechnological potential of the Alpine bog microbiome

Oberauner, L., Zachow, C., Müller, H., Thallinger, G., Bragina, A. & Berg, G., 17 Sep 2012.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Microarray Meta-Analysis: From Data to Expression to Biological Relationships

Feichtinger, J., Thallinger, G., McFarlane, R. J. & Larcombe, L. D., 2012, (Accepted/In press) Computational Medicine: Tools and Challenges. 1 ed. Wien: Springer

Research output: Chapter in Book/Report/Conference proceedingChapterResearch

MuteinDB: the mutein database linking substrates, products and enzymatic reactions directly with genetic variants of enzymes

Braun, A., Halwachs, B., Geier, M., Weinhandl, K., Guggemos, M., Marienhagen, J., Ruff, A. J., Schwaneberg, U., Torres Pazmiño, D. E., Rabin, V., Thallinger, G. & Glieder, A., 2012, In : Database - The Journal of Biological Databases and Curation . p. bas028-bas028

Research output: Contribution to journalArticleResearchpeer-review

2011

CODI-STRAT – An Interdisciplinary Network Geared towards Sustainable Management of Chronic and Infective Diseases

Sodin-Semrl, S., Lakota, K. & Thallinger, G., 2011, Proceedings of the 12th International Conference, 23–26. ., p. 237-255

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Could antibodies against serum amyloid A function as physiological regulators in humans?

Lakota, K., Thallinger, G., Cucnik, S., Bozic, B., Mrak-Poljsak, K., Ambrozic, A., Rozman, B., Blinc, A., Tomsic, M. & Sodin-Semrl, S., 2011, In : Autoimmunity. 44, 2, p. 149-158

Research output: Contribution to journalArticleResearchpeer-review

Genome Sequence of the Ruminal Bacterium Megasphaera elsdenii

Marx, H., Graf, A. B., Tatoo, N. E., Thallinger, G., Mattanovich, D. & Sauer, M., 2011, In : Journal of bacteriology. 193, 19, p. 5578-5579

Research output: Contribution to journalArticleResearchpeer-review

GiSAO.db: a database for ageing research.

Hofer, E., Laschober, G. T., Hackl, M., Thallinger, G., Günter, L., Grillari, J., Jansen-Dürr, P. & Trajanoski, Z., 2011, In : BMC Genomics . 12, 1, p. 262-262

Research output: Contribution to journalArticleResearchpeer-review

High-quality genome sequence of Pichia pastoris CBS7435

Küberl, A., Schneider, J., Thallinger, G., Anderl, I., Wibberg, D., Hajek, T., Jaenicke, S., Brinkrolf, K., Goesmann, A., Szczepanowski, R., Pühler, A., Schwab, H., Glieder, A. & Pichler, H., 2011, In : Journal of Biotechnology. 154, p. 312-320

Research output: Contribution to journalArticleResearchpeer-review

Lipid Data Analyzer: unattended identification and quantitation of lipids in LC-MS data

Hartler, J., Trötzmüller, M., Chitraju, C., Spener, F., Köfeler, H. & Thallinger, G., 2011, In : Bioinformatics. 27, 4, p. 572-577

Research output: Contribution to journalArticleResearchpeer-review

Phytochemical cluster analysis of extracts from Huang Lian Jie Du Tang and its single constituents

Widowitz, U., Thallinger, G. & Bauer, R., 2011.

Research output: Contribution to conferencePosterResearch

Population dynamics of the colonic microbiota in response to osmotic diarrhea

Gorkiewicz, G., Thallinger, G., Trajanoski, S., Stocker, G., Hinterleitner, T., Gülly, C. & Högenauer, C., 2011.

Research output: Contribution to conferencePosterResearch

Population dynamics of the colonic microbiota in response to osmotic diarrhea

Gorkiewicz, G., Thallinger, G., Trajanoski, S., Stocker, G., Hinterleitner, T., Gülly, C. & Högenauer, C., 2011.

Research output: Contribution to conferencePosterResearch

Second Year Report, Bioinformatics Integration Network III

Thallinger, G., Stark, A., Novatchkova, M., von Haeseler, A., Hofacker, I., Djinovic-Carugo, K., Bennett, K. L., Baumgartner, C., Colinge, J. & Trajanoski, Z., 2011, .

Research output: Book/ReportOther reportResearch

SnoWMAn: high throughput phylotyping

Stocker, G., Snajder, R., Halwachs, B., Trajanoski, S., Gorkiewicz, G. & Thallinger, G., 2011.

Research output: Contribution to conferencePosterResearch

The complete genome sequence of the rumen bacterium Megasphaera elsdenii

Marx, H., Graf, A. B., Tatoo, N. E., Thallinger, G., Mattanovich, D. & Sauer, M., 2011.

Research output: Contribution to conferencePosterResearch