Gerhard Thallinger

Dipl.-Ing. Dr.techn.

20002020
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Research Output 2000 2019

2015

Deriving patterns of gastrointestinal dysbiosis

Halwachs, B., Thallinger, G., Högenauer, C. & Gorkiewicz, G., 2015.

Research output: Contribution to conferencePosterResearch

Deriving patterns of gastrointestinal dysbiosis

Halwachs, B., Högenauer, C., Thallinger, G. & Gorkiewicz, G., 10 Jun 2015.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Hydroxynitrile lyase from fern: A Unique Biocatalyst

Lanfranchi, E., Winkler, M., Pavkov-Keller, T., Köhler, E-M., Diepold, M., Darnhofer, B., Steiner, K., Thallinger, G., Birner-Grünberger, R., Van Pelt, S., Gruber, K. & Glieder, A., 21 Sep 2015.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Lipid Data Analyzer (LDA) 2: Flexible and Automatic Identification of Lipid Structures in High-Throughput LC-MSn Data from Various Instruments

Hartler, J., Triebl, A., Trötzmüller, M., Ziegl, A., Rechberger, G., Spener, F., Köfeler, H. & Thallinger, G., 2015.

Research output: Contribution to conferencePosterResearch

miR-199a and miR-497 Are Associated with Better Overall Survival due to Increased Chemosensitivity in Diffuse Large B-Cell Lymphoma Patients.

Troppan, K., Wenzl, K., Pichler, M., Pursche, B., Schwarzenbacher, D., Feichtinger, J., Thallinger, G., Beham-Schmid, C., Neumeister, P. & Deutsch, A. J., 2015, In : International Journal of Molecular Sciences . 16, 8, p. 18077-18095

Research output: Contribution to journalArticleResearchpeer-review

Restoration of female fertility in Trichoderma reesei QM6a provides the basis for inbreeding

Linke, R., Thallinger, G., Haarmann, T., Eidner, J., Schreiter, M., Lorenz, P., Seiboth, B. & Kubicek, C. P., 2015, In : Biotechnology for Biofuels . 8, p. 155-155

Research output: Contribution to journalArticleResearchpeer-review

The unique hydroxynitrile lyase from fern

Lanfranchi, E., Winkler, M., Pavkov-Keller, T., Köhler, E-M., Diepold, M., Darnhofer, B., Steiner, K., Thallinger, G., Birner-Grünberger, R., van Pelt, S., Gruber, K. & Glieder, A., 2015.

Research output: Contribution to conferencePosterResearch

2014

Admission To Intensive Care Units And Not Antibiotic Therapy Drives Lower Respiratory Tract Fungal Flora To Candida

Krause, R., Halwachs, B., Klymiuk, I., Gorkiewicz, G., Zollner-Schwetz, I., Hönigl, M., Valentin, T. & Thallinger, G., 2014.

Research output: Contribution to conferencePosterResearch

A novel stable isotope labelling assisted workflow for improved untargeted LC-HRMS based metabolomics research

Bueschl, C., Kluger, B., Lemmens, M., Adam, G., Wiesberger, G., Maschietto, V., Marocco, A., Strauss, J., Bödi, S., Thallinger, G., Krska, R. & Schuhmacher, R., 2014, In : Metabolomics. 10, 4, p. 754-769

Research output: Contribution to journalArticleResearchpeer-review

A physicians' wish list for the clinical application of intestinal metagenomics

Klymiuk, I., Högenauer, C., Halwachs, B., Thallinger, G., Fricke, F. W. & Steininger, C., 2014, In : PLoS medicine. 11, 4, p. e1001627-e1001627

Research output: Contribution to journalArticleResearchpeer-review

Assessment of lipidomic species in hepatocyte lipid droplets from stressed mouse models

Hartler, J., Köfeler, H., Trötzmüller, M., Thallinger, G. & Spener, F., 2014, In : Scientific Data . 1, 140051, p. 1-12

Research output: Contribution to journalArticleResearchpeer-review

Candida Colonization of the Lower Respiratory Tract Investigated by Conventional Culture and Fungal Microbiome Analysis

Krause, R., Halwachs, B., Klymiuk, I., Gorkiewicz, G., Zollner-Schwetz, I., Valentin, T., Hönigl, M. & Thallinger, G., 2014.

Research output: Contribution to conferencePosterResearch

Comparative Genome Analysis of Campylobacter fetus Subspecies Revealed Horizontally Acquired Genetic Elements Important for Virulence and Niche Specificity

Kienesberger, S., Sprenger, H., Wolfgruber, S., Halwachs, B., Thallinger, G., Perez-Perez, G. I., Blaser, M. J., Zechner, E. & Gorkiewicz, G., 2014, In : PLoS ONE. 9, 1, p. e85491-e85491

Research output: Contribution to journalArticleResearchpeer-review

Ecology, diversity and ecosystem functioning of Sphagnum-dominated bog microbiome.

Bragina, A., Oberauner-Wappis, L., Berg, C., Zachow, C., Halwachs, B., Thallinger, G., Müller, H. & Berg, G., 14 Jun 2014.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Enhanced whole genome sequence and annotation of Clostridium stercorarium DSM8532T using RNA-seq transcriptomics and high-throughput proteomics

Schellenberg, J. J., Verbeke, T. J., McQueen, P., Krokhin, O. V., Zhang, X., Alvare, G., Fristensky, B., Thallinger, G., Henrissat, B., Wilkins, J. A., Levin, D. B. & Sparling, R., 2014, In : BMC Genomics . 15, 1, p. 567-567

Research output: Contribution to journalArticleResearchpeer-review

Finished Genome Sequence of Escherichia coli K-12 Strain HMS174 (ATCC 47011)

Mairhofer, J., Krempl, P., Thallinger, G. & Striedner, G., 2014, In : Genome Announcements. 2, 6, p. e00975-14-e00975-14

Research output: Contribution to journalArticleResearchpeer-review

Finished Genome Sequence of the Laboratory Strain Escherichia coli K-12 RV308 (ATCC 31608).

Krempl, P., Mairhofer, J., Striedner, G. & Thallinger, G., 2014, In : Genome Announcements. 2, 6, p. e00971-14-e00971-14

Research output: Contribution to journalArticleResearchpeer-review

From ecology to function: exploring the moss microbiome as a biotechnological resource

Müller, C. A., Bragina, A., Oberauner-Wappis, L., Halwachs, B., Zachow, C., Thallinger, G. & Berg, G., 2014.

Research output: Contribution to conferencePosterResearch

Identification of active compounds in Lonicera species by means of metabolic profiling with LC-MS

Ortmann, S., Hartler, J., Monschein, M., Miao, J., Zhao, Y. M., Thallinger, G. & Bauer, R., 2014.

Research output: Contribution to conferencePosterResearch

Integration and validation of resources for high-throughput classification of fungal communities

Halwachs, B., Nilsson, R. H., Abarenkov, K. & Thallinger, G., 2014.

Research output: Contribution to conferencePosterResearch

Integrative omics analysis. A study based on Plasmodium falciparum mRNA and protein data.

Tomescu, O. A., Mattanovich, D. & Thallinger, G., 2014, In : BMC Systems Biology. 8, Suppl. 2, p. S4-S4

Research output: Contribution to journalArticleResearchpeer-review

LC-MS Metabolic Profiling for the Identification of Active Compounds in Lonicera Species

Ortmann, S., Monschein, M., Hartler, J., Zhao, Y. M., Miao, J., Thallinger, G. & Bauer, R., 2014.

Research output: Contribution to conferencePosterResearch

LC-MS metabolic profiling for the identification of bioactive compounds in Lonicera species

Ortmann, S., Monschein, M., Hartler, J., Zhao, Y. M., Miao, J., Thallinger, G. & Bauer, R., 2014.

Research output: Contribution to conferencePosterResearch

LC-MS metabolic profiling for the identification of bioactive compounds in medicinal plants

Ortmann, S., Monschein, M., Hartler, J., Zhao, Y. M., Miao, J., Thallinger, G. & Bauer, R., 2014.

Research output: Contribution to conferencePosterResearch

LDA 2 - flexible lipid identification for LC-MSn data

Hartler, J., Triebl, A., Trötzmüller, M., Ziegl, A., Köfeler, H. & Thallinger, G., 22 Sep 2014.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Metabolic Profiling mittels LC-MS als Strategie für die Identifizierung von Wirksubstanzen aus Arzneidrogen

Ortmann, S., Monschein, M., Hartler, J., Zhao, Y. M., Miao, J., Thallinger, G. & Bauer, R., 2014.

Research output: Contribution to conferencePosterResearch

Metabolic Profiling of Clematis Species to Identify Compounds with an Inhibitory Effect on NF-κB Transactivation

Monschein, M., Pferschy-Wenzig, E-M., Ortmann, S., Huber, C., Atanasov, A., Malainer, C., Hartler, J., Heiß, E., Zhao, Y. M., Thallinger, G., Dirsch, V. & Bauer, R., 2014.

Research output: Contribution to conferencePosterResearch

Metabolic profiling of Lonicera species as a concept to identify compounds with an inhibitory effect on NF-κB transactivation

Ortmann, S., Monschein, M., Hartler, J., Malainer, C., Heiß, E., Zhao, Y. M., Miao, J., Atanasov, A., Thallinger, G., Dirsch, V. & Bauer, R., 2014.

Research output: Contribution to conferencePosterResearch

Metabolic Profiling of Lonicera Species for the Identification of Constituents Relevant for Inhibition of NO production in LPS-/IFN-γ-stimulated RAW 264.7 mouse macrophages

Ortmann, S., Monschein, M., Hartler, J., Zhao, Y. M., Miao, J., Thallinger, G. & Bauer, R., 2014.

Research output: Contribution to conferencePosterResearch

MuteinDB: a database of enzyme variants linked to substrates, products, and enzymatic reaction properties using a standardized input format

Halwachs, B., Braun, A., Camattari, A., Glieder, A. & Thallinger, G., 2014.

Research output: Contribution to conferencePosterResearch

NR4A1-mediated apoptosis supresses lymphomagenesis and is associated with a favorable cancer specific survival in patients with aggressive B-cell lymphomas

Deutsch, A., Rinner, B., Wenzl, K., Pichler, M., Troppan, K., Steinbauer, E., Schwarzenbacher, D., Reitter, S., Feichtinger, J., Tierling, S., Prokesch, A., Scheideler, M., Krogsdam, A., Thallinger, G., Schaider, H., Beham-Schmid, C. & Neumeister, P., 2014, In : Blood. 123, 15, p. 2367-2377

Research output: Contribution to journalArticleResearchpeer-review

Peroxidase gene discovery from the horseradish transcriptome

Näätsaari, L., Krainer, F., Schubert, M., Glieder, A. & Thallinger, G., 2014, In : BMC Genomics . 15, 1, p. 227-227

Research output: Contribution to journalArticleResearchpeer-review

Resolving tumor heterogeneity: genes involved in chordoma cell development identified by low-template analysis of morphologically distinct cells

El-Heliebi, A., Kroneis, T., Wagner, K., Meditz, K., Kolb, D., Feichtinger, J., Thallinger, G., Quehenberger, F., Liegl-Atzwanger, B. & Rinner, B., 2014, In : PLoS ONE. 9, 2, p. e87663-e87663

Research output: Contribution to journalArticleResearchpeer-review

SnoWMAn: a Straightforward NOvel Webinterface for Microbiome ANalysis

Halwachs, B., Snajder, R., Höftberger, J., Stocker, G., Gorkiewicz, G. & Thallinger, G., 2014.

Research output: Contribution to conferencePosterResearch

Stenotrophomonas comparative genomics reveals genes and functions that differentiate beneficial and pathogenic bacteria

Alavi, M., Starcher, M., Thallinger, G., Zachow, C., Müller, H. & Berg, G., 2014, In : BMC Genomics . 151, p. 482-482

Research output: Contribution to journalArticleResearchpeer-review

The mzTab Data Exchange Format: communicating MS-based proteomics and metabolomics experimental results to a wider audience

Griss, J., Jones, A. R., Sachsenberg, T., Walzer, M., Laurent, G., Hartler, J., Thallinger, G., Salek, R. M., Steinbeck, C., Nadin, N., Cox, J., Neumann, S., Fan, J., Reisinger, F., Qing-Wei, X., del Toro, N., Perez-Riverol, Y., Ghali, F., Bandeira, N., Xenarios, I. & 3 othersKohlbacher, O., Vizcaino, J. A. & Henning, H., 2014, In : Molecular & cellular proteomics. 13, 10, p. 2765-2775

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

The Sphagnum microbiome supports bog ecosystem functioning under extreme conditions.

Bragina, A., Oberauner-Wappis, L., Zachow, C., Halwachs, B., Thallinger, G., Müller, H. & Berg, G., 2014, In : Molecular ecology. 23, 18, p. 4489-4851

Research output: Contribution to journalArticleResearchpeer-review

Towards improved membrane protein production in Pichia pastoris: general and specific transcriptional response to membrane protein overexpression

Vogl, T., Thallinger, G., Zellnig, G., Drew, D., Cregg, J., Glieder, A. & Freigaßner, M. E., 2014, In : New biotechnology. 31, 6, p. 538-552

Research output: Contribution to journalArticleResearchpeer-review

Triglyceride analysis of complex biological samples using HPLC-HR-AM-MS/MS

Triebl, A., Trötzmüller, M., Hartler, J., Thallinger, G. & Köfeler, H., 2014.

Research output: Contribution to conferencePosterResearch

Untargeted profiling of tracer-derived metabolites using stable isotopic labeling and fast polarity-switching LC-ESI-HRMS

Kluger, B., Bueschl, C., Neumann, N., Stückler, R., Doppler, M., Chassy, A. W., Waterhouse, A. L., Rechthaler, J., Kampleitner, N., Thallinger, G., Adam, G., Krska, R. & Schuhmacher, R., 2014, In : Analytical Chemistry. 86, 23, p. 11533-11537

Research output: Contribution to journalArticleResearchpeer-review

2013

A Bioinformatics Approach for Integrated Transcriptomic and Proteomic Comparative Analyses of Model and Non-sequenced Anopheline Vectors of Human Malaria Parasites.

Ubaida Mohien, C., Colquhoun, D., Mathias, D., Gibbons, J., Armistead, J., Rodriguez, M., Rodriguez, M., Edwards, N., Hartler, J., Thallinger, G., Graham, D., Martinez-Barnetche, J., Rokas, A. & Dinglasan, R., 2013, In : Molecular & cellular proteomics. 12, 1, p. 120-131

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Alterations in the colonic microbiota in response to osmotic diarrhea

Gorkiewicz, G., Thallinger, G., Trajanoski, S., Lackner, S., Stocker, G., Hinterleitner, T., Gülly, C. & Högenauer, C., 2013, In : PLoS ONE. 8, 2, p. e55817-

Research output: Contribution to journalArticleResearchpeer-review

Bioinformatics tools and challenges in structural analysis of lipidomics MS/MS data

Hartler, J., Tharakan, R., Köfeler, H., Graham, D. & Thallinger, G., 2013, In : Briefings in Bioinformatics. 14, 3, p. 375-390

Research output: Contribution to journalArticleResearchpeer-review

Campylobacter fetus subspecies as Model Organisms for Studying Niche and Host Adaptations

Sprenger, H., Kienesberger, S., Thallinger, G., Gorkiewicz, G. & Zechner, E. L., 8 Feb 2013.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Chordoma Low-Template Microarray Analysis

Feichtinger, J., El-Heliebi, A., Kroneis, T., Wagner, K., Liegl-Atzwanger, B., Leithner, A., Thallinger, G. & Rinner, B., 2013, (Accepted/In press) Biomedizinische Technik / Biomedical Engineering. Walter de Gruyter (WdG)

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Comparison of microbial community profiles

Halwachs, B., Fickert, P., Trauner, M., Gorkiewicz, G., Pollheimer, M., Högenauer, C. & Thallinger, G., 2013.

Research output: Contribution to conferencePosterResearch

Comparison of Osmotic Conditions Based on Integrative Analysis Methods

Tomescu, O. A., Dragosits, M., Graf, A., Gasser, B., Mattanovich, D. & Thallinger, G., 13 Feb 2013.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Complete Genome Sequence of the Sugar Beet Endophyte Pseudomonas poae RE*1-1-14: a Disease-Suppressive Bacterium

Müller, H., Zachow, C., Alavi, M., Tilcher, R., Krempl, P., Thallinger, G. & Berg, G., 2013, In : Genome Announcements. 1, 2, p. e00020-13-

Research output: Contribution to journalArticleResearchpeer-review

Complete mitochondrial DNA sequences of the threadfin cichlid (Petrochromis trewavasae) and the blunthead cichlid (Tropheus moorii) and patterns of mitochondrial genome evolution in cichlid fishes.

Fischer, C., Koblmüller, S., Gülly, C., Schlötterer, C., Sturmbauer, C. & Thallinger, G., 2013, In : PLoS ONE. 8, 6, p. e67048-e67048

Research output: Contribution to journalArticleResearchpeer-review