Gerhard Thallinger

Dipl.-Ing. Dr.techn.

20002020
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Research Output 2000 2019

(Old data) Lecture or Presentation

ArrayNorm: A versatile Java tool for microarray normalization, Molecular medicine beyond differentially expressed genes: Systematic approaches and mathematical modeling

Pieler, R., Sánchez Cabo, F., Hackl, H., Thallinger, G., Molidor, R. & Trajanoski, Z., 5 Dec 2003.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

ArrayNorm: A versatile Java tool for microarray normalization.

Pieler, R., Sánchez Cabo, F., Hackl, H., Thallinger, G. & Trajanoski, Z., 1 Jul 2004.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Campylobacter fetus subspecies as Model Organisms for Studying Niche and Host Adaptations

Sprenger, H., Kienesberger, S., Thallinger, G., Gorkiewicz, G. & Zechner, E. L., 8 Feb 2013.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Comparison of Osmotic Conditions Based on Integrative Analysis Methods

Tomescu, O. A., Dragosits, M., Graf, A., Gasser, B., Mattanovich, D. & Thallinger, G., 13 Feb 2013.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Comparison of Osmotic Conditions Based on Integrative Analysis Methods for Omics Data

Tomescu, O. A., Dragosits, M., Graf, A., Gasser, B., Mattanovich, D. & Thallinger, G., 24 Sep 2012.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Database of Protein Protein Interactions in Crystals

Steinkellner, G., Gruber, K., Jorde, M., Rader, R., Thallinger, G., Kratky, C. & Trajanoski, Z., 8 Nov 2004.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Deriving patterns of gastrointestinal dysbiosis

Halwachs, B., Högenauer, C., Thallinger, G. & Gorkiewicz, G., 10 Jun 2015.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Development of a web based mass spectrometry analysis system.

Hartler, J., Fuchs, T., Thallinger, G., Morandell, S., Huber, LA., Mechtler, K. & Trajanoski, Z., 12 Nov 2004.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Ecology, diversity and ecosystem functioning of Sphagnum-dominated bog microbiome.

Bragina, A., Oberauner-Wappis, L., Berg, C., Zachow, C., Halwachs, B., Thallinger, G., Müller, H. & Berg, G., 14 Jun 2014.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Genomic sequencing of two members of the eco-morphologically diverse cichlid tribe Tropheini

Sturmbauer, C., Gülly, C., Schlötterer, C., Trajanoski, S., Fischer, C. & Thallinger, G., 21 Sep 2012.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

High resolution CCD scanner for cDNA microarray analysis.

Hackl, H., Thallinger, G., Wach, P., Leberl, F. & Trajanoski, Z., 17 Jan 2000.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Hydroxynitrile lyase from fern: A Unique Biocatalyst

Lanfranchi, E., Winkler, M., Pavkov-Keller, T., Köhler, E-M., Diepold, M., Darnhofer, B., Steiner, K., Thallinger, G., Birner-Grünberger, R., Van Pelt, S., Gruber, K. & Glieder, A., 21 Sep 2015.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Integrative Analysis of OMICS Data

Thallinger, G., 12 Dec 2016.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

JAVA-based microarray image analysis tool

Molidor, R., Hackl, H., Maurer, M., Thallinger, G., Wach, P. & Trajanoski, Z., 24 Jan 2001.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

LDA 2 - flexible lipid identification for LC-MSn data

Hartler, J., Triebl, A., Trötzmüller, M., Ziegl, A., Köfeler, H. & Thallinger, G., 22 Sep 2014.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Lipid Data Analyzer: Application for Automated Identification and Quantitation of LC-MS Data

Hartler, J., Trötzmüller, M., Köfeler, H., Spener, F. & Thallinger, G., 26 Apr 2010.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Lipid Data Analyzer: Application for the automated identification and quantitation of LC-MS data

Hartler, J., Trötzmüller, M., Köfeler, H. & Thallinger, G., 18 Jan 2010.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Lipid Data Analyzer: automated identification and quantitation of lipid species in LC-MS data

Hartler, J., Trötzmüller, M., Fauland, A., Chitraju, C., Spener, F., Köfeler, H. & Thallinger, G., 6 Mar 2012.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Lipid Data Analyzer: Automated Identification of Lipid Structures in High-Throughput LC-MSn Data

Thallinger, G., 31 Mar 2016.

Research output: Contribution to conference(Old data) Lecture or PresentationResearchpeer-review

Throughput
Lipids
Fatty Acids
Mass spectrometers
Graphical user interfaces

Lipid Data Analyzer: unattended identification and quantitation of lipids in LC‐MS data

Hartler, J., Trötzmüller, M., Chitraju, C., Spener, F., Köfeler, H. & Thallinger, G., 21 Sep 2012.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Management and Analysis of Proteomics LC-MS/MS Data

Hartler, J., Thallinger, G., Stocker, G., Sturn, A., Burkard, T., Körner, E., Mechtler, K. & Trajanoski, Z., 28 Jan 2007.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

MARS: Microarray Analysis and Retrieval System

Sturn, A., Maurer, M., Molidor, R., Pieler, R., Rainer, J., Mlecnik, B., Truskaller, T., Zeller, D., Trost, E., Sánchez Cabo, F., Hackl, H., Thallinger, G. & Trajanoski, Z., 8 Nov 2004.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

MARS: Microarray Analysis and Retrieval System

Molidor, R., Sturn, A., Maurer, M., Thallinger, G., Pieler, R., Rainer, J., Mlecnik, B., Truskaller, T., Zeller, D., Trost, E., Sánchez Cabo, F., Hackl, H. & Trajanoski, Z., 27 Jan 2005.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

MARS: Microarray Analysis and Retrieval System. Biological Discovery Using Diverse High-Throughput Data

Sturn, A., Maurer, M., Molidor, R., Pieler, R., Rainer, J., Mlecnik, B., Truskaller, T., Zeller, D., Trost, E., Sánchez Cabo, F., Hackl, H., Thallinger, G. & Trajanoski, Z., 20 Mar 2004.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

MARS: Microarray Analysis and Retrieval System. „Bytes & Genes“

Molidor, R., Sturn, A., Maurer, M., Thallinger, G., Pieler, R., Sánchez Cabo, F., Hackl, H. & Trajanoski, Z., 14 Nov 2005.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

MASPECTRAS:Web-based System for Storage, Retrieval, and Analysis of Proteomic LC MS/MS Data.

Hartler, J., Thallinger, G., Stocker, G., Sturn, A., Burkard, T., Körner, E., Fuchs, T., Mechtler, K. & Trajanoski, Z., 29 Aug 2005.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

MASPECTRAS:Web-based System for Storage, Retrieval, Quantification and Analysis of Proteomic LC MS/MS Data

Hartler, J., Thallinger, G., Stocker, G., Sturn, A., Burkard, T., Körner, E., Fuchs, T., Mechtler, K. & Trajanoski, Z., 16 Jan 2006.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

MASPECTRAS: Web-basiertes Datenbanksystem zur Verwaltung von Proteomik-Daten

Hartler, J., Thallinger, G., Sturn, A., Burkard, T., Körner, E., Fuchs, T., Mechtler, K. & Trajanoski, Z., 1 Oct 2005.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Metagenomics to explore the ecology and biotechnological potential of the Alpine bog microbiome

Oberauner, L., Zachow, C., Müller, H., Thallinger, G., Bragina, A. & Berg, G., 17 Sep 2012.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

PPIX- A Database of Protein Protein Interactions in Crystals

Steinkellner, G., Gruber, K., Jorde, M., Rader, R., Thallinger, G. & Kratky, C., 1 Jul 2004.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

The Mutein Database (MutDB)

Thallinger, G., Guggemos, M., Zach, S., Rabin, V., Schittmayer, M. & Glieder, A., 23 Jul 2006.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

The Yeast Protein Localization Database

Kals, M., Natter, K., Habeler, G., Thallinger, G., Trajanoski, Z. & Kohlwein, SD., 21 Sep 2003.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

TMA db: Verwaltung und Analyse von Tissue Microarray Daten

Thallinger, G., Pirklbauer, M., Uray, M., Pauritsch, E., Buck, CK., Zatloukal, K. & Trajanoski, Z., 12 Nov 2004.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Transcriptomics-based engineering of Pichia pastoris for improved production of eukaryotic membrane proteins

Freigaßner, M. E., Thallinger, G., Drew, D., Pichler, H., Cregg, J. & Glieder, A., 18 Oct 2009.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

YPL.db: A web archive for protein localization data from yeast

Habeler, G., Natter, K., Thallinger, G., Wach, P., Trajanoski, Z. & Kohlwein, SD., 26 Aug 2001.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

YPL.db - The Yeast Protein Localization Database.

Kals, M., Natter, K., Habeler, G., Thallinger, G., Wach, P., Trajanoski, Z. & Kohlwein, SD., 7 Jul 2003.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Anthology

10th Austrian Proteomic Research Symposium - Special Focus on Functional Proteomics

Hartler, J. (ed.), Birner-Grünberger, R. (ed.), Gesslbauer, B. (ed.) & Thallinger, G. (ed.), 2012, .

Research output: Book/ReportAnthologyResearch

Article

A Bioinformatics Approach for Integrated Transcriptomic and Proteomic Comparative Analyses of Model and Non-sequenced Anopheline Vectors of Human Malaria Parasites.

Ubaida Mohien, C., Colquhoun, D., Mathias, D., Gibbons, J., Armistead, J., Rodriguez, M., Rodriguez, M., Edwards, N., Hartler, J., Thallinger, G., Graham, D., Martinez-Barnetche, J., Rokas, A. & Dinglasan, R., 2013, In : Molecular & cellular proteomics. 12, 1, p. 120-131

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

A Comprehensive FXR Signaling Atlas Derived from Pooled ChIP-seq Data

Jungwirth, E., Panzitt, K., Marschall, H-U., Wagner, M. & Thallinger, G. G., 2019, In : Studies in health technology and informatics. 260, p. 105-112 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
Atlases
Transcription factors
Binding sites
Gene expression
Liver

A concise review of significantly modified serological biomarkers in giant cell arteritis, as detected by different methods

Burja, B., Kuret, T., Sodin-Semrl, S., Lakota, K., Rotar, Ž., Ješe, R., Mrak-Poljšak, K., Žigon, P., Thallinger, G. G., Feichtinger, J., Čučnik, S., Tomšič, M., Praprotnik, S. & Hočevar, A., 1 Feb 2018, In : Autoimmunity Reviews. 17, 2, p. 188-194

Research output: Contribution to journalArticleResearchpeer-review

Giant Cell Arteritis
Biomarkers
Arteries
Systemic Vasculitis
Acute-Phase Proteins

Alterations in the colonic microbiota in response to osmotic diarrhea

Gorkiewicz, G., Thallinger, G., Trajanoski, S., Lackner, S., Stocker, G., Hinterleitner, T., Gülly, C. & Högenauer, C., 2013, In : PLoS ONE. 8, 2, p. e55817-

Research output: Contribution to journalArticleResearchpeer-review

A novel stable isotope labelling assisted workflow for improved untargeted LC-HRMS based metabolomics research

Bueschl, C., Kluger, B., Lemmens, M., Adam, G., Wiesberger, G., Maschietto, V., Marocco, A., Strauss, J., Bödi, S., Thallinger, G., Krska, R. & Schuhmacher, R., 2014, In : Metabolomics. 10, 4, p. 754-769

Research output: Contribution to journalArticleResearchpeer-review

A physicians' wish list for the clinical application of intestinal metagenomics

Klymiuk, I., Högenauer, C., Halwachs, B., Thallinger, G., Fricke, F. W. & Steininger, C., 2014, In : PLoS medicine. 11, 4, p. e1001627-e1001627

Research output: Contribution to journalArticleResearchpeer-review

ArrayNorm: comprehensive normalization and analysis of microarray data.

Pieler, R., Sanchez Cabo, F., Hackl, H., Thallinger, G. & Trajanoski, Z., 2004, In : Bioinformatics. 20, 12, p. 1971-1973

Research output: Contribution to journalArticleResearchpeer-review

A Sequence Based Validation of Gene Expression Microarray Data

Thallinger, G., Obermayr, E., Charoentong, P., Tong, D., Trajanoski, Z. & Zeillinger, R., 2012, In : American journal of bioinformatics. 1, 1, p. 1-9

Research output: Contribution to journalArticleResearchpeer-review

A sequence comparison and gene expression data integration add-on for the Pathway Tools software

Krempl, P., Mairhofer, J., Striedner, G. & Thallinger, G., 2012, In : Bioinformatics. 28, 17, p. 2283-2284

Research output: Contribution to journalArticleResearchpeer-review

Assessment of lipidomic species in hepatocyte lipid droplets from stressed mouse models

Hartler, J., Köfeler, H., Trötzmüller, M., Thallinger, G. & Spener, F., 2014, In : Scientific Data . 1, 140051, p. 1-12

Research output: Contribution to journalArticleResearchpeer-review

ATGL and CGI-58 are lipid droplet proteins of the hepatic stellate cell line HSC-T6

Eichmann, T., Grumet, L., Taschler, U., Hartler, J., Heier, C., Woblistin, A., Pajed, L., Kollroser, M., Rechberger, G., Thallinger, G. G., Zechner, R., Haemmerle, G., Zimmermann, R. & Lass, A., 2015, In : Journal of lipid research. p. 1972-1984

Research output: Contribution to journalArticleResearchpeer-review

A Toolbox of Diverse Promoters Related to Methanol Utilization: Functionally Verified Parts for Heterologous Pathway Expression in Pichia pastoris

Vogl, T., Sturmberger, L., Kickenweiz, T., Wasmayer, R., Schmid, C., Hatzl, A-M., Gerstmann, M. A., Pitzer, J., Wagner, M., Thallinger, G. G., Geier, M. & Glieder, A., 19 Feb 2016, In : ACS Synthetic Biology . 5, 2, p. 172-86 15 p.

Research output: Contribution to journalArticleResearchpeer-review

Pichia
Methanol
alcohol oxidase
Genes
Biosynthetic Pathways

Autoimmune response following influenza vaccination

Perdan-Pirkmajer, K., Thallinger, G., Snoj, N., Cucnik, S., Žigon, P., Kveder, T., Logar, D., Praprotnik, S., Tomsic, M., Sodin-Semrl, S. & Ambrozic, A., 2012, In : Lupus. 21, 2, p. 175-183

Research output: Contribution to journalArticleResearchpeer-review