Gerhard Thallinger

Dipl.-Ing. Dr.techn.

20002020
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Research Output 2000 2019

10th Austrian Proteomic Research Symposium - Special Focus on Functional Proteomics

Hartler, J. (ed.), Birner-Grünberger, R. (ed.), Gesslbauer, B. (ed.) & Thallinger, G. (ed.), 2012, .

Research output: Book/ReportAnthologyResearch

A Bioinformatics Approach for Integrated Transcriptomic and Proteomic Comparative Analyses of Model and Non-sequenced Anopheline Vectors of Human Malaria Parasites.

Ubaida Mohien, C., Colquhoun, D., Mathias, D., Gibbons, J., Armistead, J., Rodriguez, M., Rodriguez, M., Edwards, N., Hartler, J., Thallinger, G., Graham, D., Martinez-Barnetche, J., Rokas, A. & Dinglasan, R., 2013, In : Molecular & cellular proteomics. 12, 1, p. 120-131

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

A Comprehensive FXR Signaling Atlas Derived from Pooled ChIP-seq Data

Jungwirth, E., Panzitt, K., Marschall, H-U., Wagner, M. & Thallinger, G. G., 2019, In : Studies in health technology and informatics. 260, p. 105-112 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
Atlases
Transcription factors
Binding sites
Gene expression
Liver

A concise review of significantly modified serological biomarkers in giant cell arteritis, as detected by different methods

Burja, B., Kuret, T., Sodin-Semrl, S., Lakota, K., Rotar, Ž., Ješe, R., Mrak-Poljšak, K., Žigon, P., Thallinger, G. G., Feichtinger, J., Čučnik, S., Tomšič, M., Praprotnik, S. & Hočevar, A., 1 Feb 2018, In : Autoimmunity Reviews. 17, 2, p. 188-194

Research output: Contribution to journalArticleResearchpeer-review

Giant Cell Arteritis
Biomarkers
Arteries
Systemic Vasculitis
Acute-Phase Proteins

Admission To Intensive Care Units And Not Antibiotic Therapy Drives Lower Respiratory Tract Fungal Flora To Candida

Krause, R., Halwachs, B., Klymiuk, I., Gorkiewicz, G., Zollner-Schwetz, I., Hönigl, M., Valentin, T. & Thallinger, G., 2014.

Research output: Contribution to conferencePosterResearch

Alterations in the colonic microbiota in response to osmotic diarrhea

Gorkiewicz, G., Thallinger, G., Trajanoski, S., Lackner, S., Stocker, G., Hinterleitner, T., Gülly, C. & Högenauer, C., 2013, In : PLoS ONE. 8, 2, p. e55817-

Research output: Contribution to journalArticleResearchpeer-review

Analysis of analytes

Hartler, J. & Thallinger, G., 30 Jul 2010, (Submitted) Patent No. AT S1547 EP

Research output: PatentResearch

A novel stable isotope labelling assisted workflow for improved untargeted LC-HRMS based metabolomics research

Bueschl, C., Kluger, B., Lemmens, M., Adam, G., Wiesberger, G., Maschietto, V., Marocco, A., Strauss, J., Bödi, S., Thallinger, G., Krska, R. & Schuhmacher, R., 2014, In : Metabolomics. 10, 4, p. 754-769

Research output: Contribution to journalArticleResearchpeer-review

A physicians' wish list for the clinical application of intestinal metagenomics

Klymiuk, I., Högenauer, C., Halwachs, B., Thallinger, G., Fricke, F. W. & Steininger, C., 2014, In : PLoS medicine. 11, 4, p. e1001627-e1001627

Research output: Contribution to journalArticleResearchpeer-review

ArrayNorm: A versatile Java tool for microarray normalization, Molecular medicine beyond differentially expressed genes: Systematic approaches and mathematical modeling

Pieler, R., Sánchez Cabo, F., Hackl, H., Thallinger, G., Molidor, R. & Trajanoski, Z., 5 Dec 2003.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

ArrayNorm: A versatile Java tool for microarray normalization.

Pieler, R., Sánchez Cabo, F., Hackl, H., Thallinger, G. & Trajanoski, Z., 1 Jul 2004.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

ArrayNorm: comprehensive normalization and analysis of microarray data.

Pieler, R., Sanchez Cabo, F., Hackl, H., Thallinger, G. & Trajanoski, Z., 2004, In : Bioinformatics. 20, 12, p. 1971-1973

Research output: Contribution to journalArticleResearchpeer-review

A Sequence Based Validation of Gene Expression Microarray Data

Thallinger, G., Obermayr, E., Charoentong, P., Tong, D., Trajanoski, Z. & Zeillinger, R., 2012, In : American journal of bioinformatics. 1, 1, p. 1-9

Research output: Contribution to journalArticleResearchpeer-review

A sequence comparison and gene expression data integration add-on for the Pathway Tools software

Krempl, P., Mairhofer, J., Striedner, G. & Thallinger, G., 2012, In : Bioinformatics. 28, 17, p. 2283-2284

Research output: Contribution to journalArticleResearchpeer-review

Assessing the Efficiency of Dye-Swap Normalization to Remove Systematic Bias from Two-Color Microarray Data

Sanchez-Cabo, F., Prokesch, A., Thallinger, G., Pieler, R., Trajanoski, Z. & Wolkenhauer, O., 2004

Research output: Non-print formWebsite / Web publicationResearch

Assessment of lipidomic species in hepatocyte lipid droplets from stressed mouse models

Hartler, J., Köfeler, H., Trötzmüller, M., Thallinger, G. & Spener, F., 2014, In : Scientific Data . 1, 140051, p. 1-12

Research output: Contribution to journalArticleResearchpeer-review

ATGL and CGI-58 are lipid droplet proteins of the hepatic stellate cell line HSC-T6

Eichmann, T., Grumet, L., Taschler, U., Hartler, J., Heier, C., Woblistin, A., Pajed, L., Kollroser, M., Rechberger, G., Thallinger, G. G., Zechner, R., Haemmerle, G., Zimmermann, R. & Lass, A., 2015, In : Journal of lipid research. p. 1972-1984

Research output: Contribution to journalArticleResearchpeer-review

A Toolbox of Diverse Promoters Related to Methanol Utilization: Functionally Verified Parts for Heterologous Pathway Expression in Pichia pastoris

Vogl, T., Sturmberger, L., Kickenweiz, T., Wasmayer, R., Schmid, C., Hatzl, A-M., Gerstmann, M. A., Pitzer, J., Wagner, M., Thallinger, G. G., Geier, M. & Glieder, A., 19 Feb 2016, In : ACS Synthetic Biology . 5, 2, p. 172-86 15 p.

Research output: Contribution to journalArticleResearchpeer-review

Pichia
Methanol
alcohol oxidase
Genes
Biosynthetic Pathways

Autoimmune response following influenza vaccination

Perdan-Pirkmajer, K., Thallinger, G., Snoj, N., Cucnik, S., Žigon, P., Kveder, T., Logar, D., Praprotnik, S., Tomsic, M., Sodin-Semrl, S. & Ambrozic, A., 2012, In : Lupus. 21, 2, p. 175-183

Research output: Contribution to journalArticleResearchpeer-review

Automated and Reliable Detection and Quantitation of Low Abundant Lipid Species and Other Metabolites in LC-MS Data

Hartler, J., Trötzmüller, M., Fauland, A., Büschl, C., Schuhmacher, R., Köfeler, H. & Thallinger, G., 2012.

Research output: Contribution to conferencePosterResearch

Bioinformatic Analysis of FXR related ChIP-seq data

Panzitt, K., Wagner, M. & Thallinger, G., Aug 2018.

Research output: Contribution to conferencePosterResearchpeer-review

Bioinformatic Analysis of FXR related ChIP-seq data

Panzitt, K., Wagner, M. & Thallinger, G., Sep 2018.

Research output: Contribution to conferencePosterResearchpeer-review

Bioinformatic Analysis of FXR related ChIP-seq data

Panzitt, K., Wagner, M. & Thallinger, G., 27 Nov 2018.

Research output: Contribution to conferencePosterResearchpeer-review

Bioinformatics tools and challenges in structural analysis of lipidomics MS/MS data

Hartler, J., Tharakan, R., Köfeler, H., Graham, D. & Thallinger, G., 2013, In : Briefings in Bioinformatics. 14, 3, p. 375-390

Research output: Contribution to journalArticleResearchpeer-review

Campylobacter fetus subspecies as Model Organisms for Studying Niche and Host Adaptations

Sprenger, H., Kienesberger, S., Thallinger, G., Gorkiewicz, G. & Zechner, E. L., 8 Feb 2013.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Candida Colonization of the Lower Respiratory Tract Investigated by Conventional Culture and Fungal Microbiome Analysis

Krause, R., Halwachs, B., Klymiuk, I., Gorkiewicz, G., Zollner-Schwetz, I., Valentin, T., Hönigl, M. & Thallinger, G., 2014.

Research output: Contribution to conferencePosterResearch

Characterisation of Candida within the Mycobiome/Microbiome of the Lower Respiratory Tract of ICU Patients

Krause, R., Halwachs, B., Thallinger, G., Klymiuk, I., Gorkiewicz, G., Hoenigl, M., Prattes, J., Valentin, T., Heidrich, K., Buzina, W., Salzer, H. J. F., Rabensteiner, J., Prüller, F., Raggam, R. B., Meinitzer, A., Moissl-Eichinger, C., Högenauer, C., Quehenberger, F., Kashofer, K. & Zollner-Schwetz, I., 20 May 2016, In : PLoS ONE. 11, 5, p. e0155033 e0155033.

Research output: Contribution to journalArticleResearchpeer-review

Intensive care units
Candida
Microbiota
respiratory system
Respiratory System

Chordoma Low-Template Microarray Analysis

Feichtinger, J., El-Heliebi, A., Kroneis, T., Wagner, K., Liegl-Atzwanger, B., Leithner, A., Thallinger, G. & Rinner, B., 2013, (Accepted/In press) Biomedizinische Technik / Biomedical Engineering. Walter de Gruyter (WdG)

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

CODI-STRAT – An Interdisciplinary Network Geared towards Sustainable Management of Chronic and Infective Diseases

Sodin-Semrl, S., Lakota, K. & Thallinger, G., 2011, Proceedings of the 12th International Conference, 23–26. ., p. 237-255

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Comparative Genome Analysis of Campylobacter fetus Subspecies Revealed Horizontally Acquired Genetic Elements Important for Virulence and Niche Specificity

Kienesberger, S., Sprenger, H., Wolfgruber, S., Halwachs, B., Thallinger, G., Perez-Perez, G. I., Blaser, M. J., Zechner, E. & Gorkiewicz, G., 2014, In : PLoS ONE. 9, 1, p. e85491-e85491

Research output: Contribution to journalArticleResearchpeer-review

Comparison and evaluation of integrative methods for the analysis of multilevel omics data: a study based on simulated and experimental cancer data

Pucher, B. M., Zeleznik, O. A. & Thallinger, G. G., 25 Mar 2019, In : Briefings in Bioinformatics. 20, 2, p. 671-681

Research output: Contribution to journalArticleResearchpeer-review

Multilevel Analysis
Microarrays
Factorization
Data mining
Neoplasms

Comparison of microbial community profiles

Halwachs, B., Fickert, P., Trauner, M., Gorkiewicz, G., Pollheimer, M., Högenauer, C. & Thallinger, G., 2013.

Research output: Contribution to conferencePosterResearch

Comparison of Osmotic Conditions Based on Integrative Analysis Methods

Tomescu, O. A., Dragosits, M., Graf, A., Gasser, B., Mattanovich, D. & Thallinger, G., 13 Feb 2013.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Comparison of Osmotic Conditions Based on Integrative Analysis Methods for Omics Data

Tomescu, O. A., Dragosits, M., Graf, A., Gasser, B., Mattanovich, D. & Thallinger, G., 24 Sep 2012.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Comparison of Osmotic Conditions Based on Integrative Analysis Methods for Omics Data

Tomescu, O. A., Dragosits, M., Graf, A., Gasser, B., Mattanovich, D. & Thallinger, G., 2012, 10th Austrian Proteomic Research Symposium (APRS) - Special Focus on Functional Proteomics. ., p. 9-9

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Comparison of Osmotic Conditions Based on Integrative Analysis Methods for -omics Data

Tomescu, O. A., Dragosits, M., Graf, A., Gasser, B., Mattanovich, D. & Thallinger, G., 2012.

Research output: Contribution to conferencePosterResearch

Comparison of tear proteome in allergic rhinoconjunctivitis patients and controls with respect to pollen season

Tomazic, P. V., Liesinger, L., Pucher, B., Thallinger, G. G., Leitner, A., Spoerk, S., Gerstenberger, C., Lang-Loidolt, D. & Birner-Gruenberger, R., Jul 2018, In : Allergy. 73, 7, p. 1541-1543

Research output: Contribution to journalArticleResearchpeer-review

Complete Genome Sequence of the Sugar Beet Endophyte Pseudomonas poae RE*1-1-14: a Disease-Suppressive Bacterium

Müller, H., Zachow, C., Alavi, M., Tilcher, R., Krempl, P., Thallinger, G. & Berg, G., 2013, In : Genome Announcements. 1, 2, p. e00020-13-

Research output: Contribution to journalArticleResearchpeer-review

Complete mitochondrial DNA sequences of the threadfin cichlid (Petrochromis trewavasae) and the blunthead cichlid (Tropheus moorii) and patterns of mitochondrial genome evolution in cichlid fishes

Fischer, C., Koblmüller, S., Gülly, C., Schlötterer, C., Sturmbauer, C. & Thallinger, G., 2012.

Research output: Contribution to conferencePosterResearch

Complete mitochondrial DNA sequences of the threadfin cichlid (Petrochromis trewavasae) and the blunthead cichlid (Tropheus moorii) and patterns of mitochondrial genome evolution in cichlid fishes.

Fischer, C., Koblmüller, S., Gülly, C., Schlötterer, C., Sturmbauer, C. & Thallinger, G., 2013, In : PLoS ONE. 8, 6, p. e67048-e67048

Research output: Contribution to journalArticleResearchpeer-review

Comprehensive (epi)genome characterisation of CHO cells in response to evolutionary pressures

Feichtinger, J., Fischer, C., Borth, N. & Thallinger, G., 16 Sep 2016.

Research output: Contribution to conferencePosterResearchpeer-review

Comprehensive Analysis of Genomic Data for 16 CHO Cell Lines to Investigate the (In)stability of the CHO Genome

Feichtinger, J., Fischer, C., Hernandez, I., Dhiman, H., Borth, N. & Thallinger, G., 2017.

Research output: Contribution to conferencePosterResearch

Comprehensive Analysis of Genomic Data for 16 CHO Cell Lines to Investigate the (In)stability of the CHO Genome

Feichtinger, J., Fischer, C., Hernández López, I., Borth, N. & Thallinger, G., 2017.

Research output: Contribution to conferencePosterResearch

Comprehensive genome and epigenome characterization of CHO cells in response to evolutionary pressures and over time

Feichtinger, J., Hernández, I., Fischer, C., Hanscho, M., Auer, N., Hackl, M., Jadhav, V., Baumann, M., Krempl, P. M., Schmidl, C., Farlik, M., Schuster, M., Merkel, A., Sommer, A., Heath, S., Rico, D., Bock, C., Thallinger, G. G. & Borth, N., Oct 2016, In : Biotechnology and Bioengineering. 113, 10, p. 2241-53 13 p.

Research output: Contribution to journalArticleResearchpeer-review

CHO Cells
Genes
Genome
DNA Methylation
Pressure

Control software for high-precision microspotting device

Maurer, M., Hackl, H., Jorde, C., Molidor, R., Thallinger, G., Wach, P. & Trajanoski, Z., 2000, 14th Annual Conference on Computational Genomics; J. Comput. Biol.. ., p. 643-643

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Correlation Matrices for the Integrative Analysis of Transcriptome and Metabolome Data Sets

Kopp, W. & Thallinger, G., 2012.

Research output: Contribution to conferencePosterResearch

Could antibodies against serum amyloid A function as physiological regulators in humans?

Lakota, K., Thallinger, G., Cucnik, S., Bozic, B., Mrak-Poljsak, K., Ambrozic, A., Rozman, B., Blinc, A., Tomsic, M. & Sodin-Semrl, S., 2011, In : Autoimmunity. 44, 2, p. 149-158

Research output: Contribution to journalArticleResearchpeer-review

Critical Issues in Mycobiota Analysis

Halwachs, B., Madhusudhan, N., Krause, R., Nilsson, R. H., Moissl-Eichinger, C., Högenauer, C., Thallinger, G. G. & Gorkiewicz, G., 2017, In : Frontiers in Microbiology . 8, 180.

Research output: Contribution to journalArticleResearchpeer-review

Microbiota
Computational Biology
Fungal Genes
rRNA Genes
Computer Simulation

Curation of the genome annotation of Pichia pastoris (Komagataella phaffii) CBS7435 from gene level to protein function

Valli, M., Tatto, N. E., Peymann, A., Gruber, C., Landes, N., Ekker, H., Thallinger, G. G., Mattanovich, D., Gasser, B. & Graf, A. B., Sep 2016, In : FEMS yeast research. 16, 6, fow051.

Research output: Contribution to journalArticleResearchpeer-review

Pichia
Open Reading Frames
Genome
Molecular Sequence Annotation
Genes