Gerhard Thallinger

Dipl.-Ing. Dr.techn.

20002020
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Research Output 2000 2019

2000

Control software for high-precision microspotting device

Maurer, M., Hackl, H., Jorde, C., Molidor, R., Thallinger, G., Wach, P. & Trajanoski, Z., 2000, 14th Annual Conference on Computational Genomics; J. Comput. Biol.. ., p. 643-643

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

High resolution CCD scanner for cDNA microarray analysis.

Hackl, H., Thallinger, G., Wach, P., Leberl, F. & Trajanoski, Z., 17 Jan 2000.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Web archive for experiment and image data of protein localisation in yeast cells on an Oracle database

Habeler, G., Natter, K., Thallinger, G., Kohlwein, S-D., Wach, P. & Trajanoski, Z., 2000, Proceedings of the 15th German Conference on Bioinformatics. Berlin: Logos Verlag, p. 43-43

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

YPL.db: An Oracle-based Webarchive for Protein Localization Data from Yeast

Habeler, G., Thallinger, G., Natter, K., Kohlwein, S-D. & Trajanoski, Z., 2000, 14th International Conference on Computational Genomics; J. Comput. Biol.. ., p. 639-639

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

2001

JAVA-based microarray image analysis tool

Molidor, R., Hackl, H., Maurer, M., Thallinger, G., Wach, P. & Trajanoski, Z., 24 Jan 2001.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

YPL.db: A web archive for protein localization data from yeast

Habeler, G., Natter, K., Thallinger, G., Wach, P., Trajanoski, Z. & Kohlwein, SD., 26 Aug 2001.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

2002

Information management systems for pharmacogenomics

Thallinger, G., Trajanoski, S., Stocker, G. & Trajanoski, Z., 2002, In : Pharmacogenomics. 3, p. 651-667

Research output: Contribution to journalArticleResearchpeer-review

YPL.db: the yeast protein localization database

Habeler, G., Natter, K., Thallinger, G., Crawford, ME., Kohlwein, S-D. & Trajanoski, Z., 2002, In : Nucleic acids research. 30, 1, p. 80-83

Research output: Contribution to journalArticleResearchpeer-review

2003

ArrayNorm: A versatile Java tool for microarray normalization, Molecular medicine beyond differentially expressed genes: Systematic approaches and mathematical modeling

Pieler, R., Sánchez Cabo, F., Hackl, H., Thallinger, G., Molidor, R. & Trajanoski, Z., 5 Dec 2003.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Progress Report 2003, Bioinformatics Integration Network

Thallinger, G., Eisenhaber, F., Schuster, P., Kratky, C., Kofler, R. & Trajanoski, Z., 2003, .

Research output: Book/ReportOther reportResearch

The Yeast Protein Localization Database

Kals, M., Natter, K., Habeler, G., Thallinger, G., Trajanoski, Z. & Kohlwein, SD., 21 Sep 2003.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

YPL.db - The Yeast Protein Localization Database.

Kals, M., Natter, K., Habeler, G., Thallinger, G., Wach, P., Trajanoski, Z. & Kohlwein, SD., 7 Jul 2003.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

2004

ArrayNorm: A versatile Java tool for microarray normalization.

Pieler, R., Sánchez Cabo, F., Hackl, H., Thallinger, G. & Trajanoski, Z., 1 Jul 2004.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

ArrayNorm: comprehensive normalization and analysis of microarray data.

Pieler, R., Sanchez Cabo, F., Hackl, H., Thallinger, G. & Trajanoski, Z., 2004, In : Bioinformatics. 20, 12, p. 1971-1973

Research output: Contribution to journalArticleResearchpeer-review

Assessing the Efficiency of Dye-Swap Normalization to Remove Systematic Bias from Two-Color Microarray Data

Sanchez-Cabo, F., Prokesch, A., Thallinger, G., Pieler, R., Trajanoski, Z. & Wolkenhauer, O., 2004

Research output: Non-print formWebsite / Web publicationResearch

Database of Protein Protein Interactions in Crystals

Steinkellner, G., Gruber, K., Jorde, M., Rader, R., Thallinger, G., Kratky, C. & Trajanoski, Z., 8 Nov 2004.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Development of a web based mass spectrometry analysis system.

Hartler, J., Fuchs, T., Thallinger, G., Morandell, S., Huber, LA., Mechtler, K. & Trajanoski, Z., 12 Nov 2004.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

MARS: Microarray Analysis and Retrieval System

Sturn, A., Maurer, M., Molidor, R., Pieler, R., Rainer, J., Mlecnik, B., Truskaller, T., Zeller, D., Trost, E., Sánchez Cabo, F., Hackl, H., Thallinger, G. & Trajanoski, Z., 8 Nov 2004.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

MARS: Microarray Analysis and Retrieval System. Biological Discovery Using Diverse High-Throughput Data

Sturn, A., Maurer, M., Molidor, R., Pieler, R., Rainer, J., Mlecnik, B., Truskaller, T., Zeller, D., Trost, E., Sánchez Cabo, F., Hackl, H., Thallinger, G. & Trajanoski, Z., 20 Mar 2004.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

PPIX- A Database of Protein Protein Interactions in Crystals

Steinkellner, G., Gruber, K., Jorde, M., Rader, R., Thallinger, G. & Kratky, C., 1 Jul 2004.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Progress Report 2004, Bioinformatics Integration Network

Thallinger, G., Eisenhaber, F., Schuster, P., Kratky, C., Kofler, R. & Trajanoski, Z., 2004, .

Research output: Book/ReportOther reportResearch

TMA db: Verwaltung und Analyse von Tissue Microarray Daten

Thallinger, G., Pirklbauer, M., Uray, M., Pauritsch, E., Buck, CK., Zatloukal, K. & Trajanoski, Z., 12 Nov 2004.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

2005

MARS: Microarray Analysis and Retrieval System

Molidor, R., Sturn, A., Maurer, M., Thallinger, G., Pieler, R., Rainer, J., Mlecnik, B., Truskaller, T., Zeller, D., Trost, E., Sánchez Cabo, F., Hackl, H. & Trajanoski, Z., 27 Jan 2005.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

MARS: Microarray Analysis and Retrieval System. „Bytes & Genes“

Molidor, R., Sturn, A., Maurer, M., Thallinger, G., Pieler, R., Sánchez Cabo, F., Hackl, H. & Trajanoski, Z., 14 Nov 2005.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

MASPECTRAS:Web-based System for Storage, Retrieval, and Analysis of Proteomic LC MS/MS Data.

Hartler, J., Thallinger, G., Stocker, G., Sturn, A., Burkard, T., Körner, E., Fuchs, T., Mechtler, K. & Trajanoski, Z., 29 Aug 2005.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

MASPECTRAS: Web-basiertes Datenbanksystem zur Verwaltung von Proteomik-Daten

Hartler, J., Thallinger, G., Sturn, A., Burkard, T., Körner, E., Fuchs, T., Mechtler, K. & Trajanoski, Z., 1 Oct 2005.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

YPL.db(2): The Yeast Protein Localization database, version 2.0

Kals, M., Natter, K., Thallinger, G., Trajanoski, Z. & Kohlwein, S-D., 2005, In : Yeast. 22, 3, p. 213-218

Research output: Contribution to journalArticleResearchpeer-review

2006

Final Report, Bioinformatics Integration Network

Thallinger, G., Eisenhaber, F., Schuster, P., Kratky, C., Kofler, R. & Trajanoski, Z., 2006, .

Research output: Book/ReportOther reportResearch

MASPECTRAS:Web-based System for Storage, Retrieval, Quantification and Analysis of Proteomic LC MS/MS Data

Hartler, J., Thallinger, G., Stocker, G., Sturn, A., Burkard, T., Körner, E., Fuchs, T., Mechtler, K. & Trajanoski, Z., 16 Jan 2006.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

The Mutein Database (MutDB)

Thallinger, G., Guggemos, M., Zach, S., Rabin, V., Schittmayer, M. & Glieder, A., 23 Jul 2006.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

2007

Data Management and Analysis for Biomolecular Arrays

Thallinger, G., 2007

Research output: ThesisDoctoral ThesisResearch

First Year Report, Bioinformatics Integration Network II

Thallinger, G., Eisenhaber, F., von Haeseler, A., Schuster, P., Djinovic-Carugo, K., Tilg, B. & Trajanoski, Z., 2007, .

Research output: Book/ReportOther reportResearch

Kontextualisierung und Visualisierung von komplexen genomischen Daten

Martin, J. G., Boyandin, I., Mlecnik, B., Thallinger, G. & Trajanoski, Z., 2007.

Research output: Contribution to conferencePosterResearch

Management and Analysis of Proteomics LC-MS/MS Data

Hartler, J., Thallinger, G., Stocker, G., Sturn, A., Burkard, T., Körner, E., Mechtler, K. & Trajanoski, Z., 28 Jan 2007.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data

Hartler, J., Thallinger, G., Stocker, G., Sturn, A., Burkard, T., Körner, E., Rader, R., Schmidt, A., Mechtler, K. & Trajanoski, Z., 2007, In : BMC Bioinformatics . 8, p. 1-13 197.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data

Hartler, J., Ubaida Mohien, C., Thallinger, G., Stocker, G., Sturn, A., Burkard, T., Körner, E., Rader, R., Schmidt, A., Colinge, J., Mechtler, K. & Trajanoski, Z., 2007.

Research output: Contribution to conferencePosterResearch

Open Access
File

TAMEE: data management and analysis for tissue microarrays

Thallinger, G., Baumgartner, K., Pirklbauer, M., Pauritsch, E. M., Uray, M., Mehes, G., Buck, C. R., Zatloukal, K. & Trajanoski, Z., 2007, In : BMC Bioinformatics . 8, p. 81-81

Research output: Contribution to journalArticleResearchpeer-review

2008

Gene expression profiling of suppressor mechanisms in tuberculosis

Smit van Dixhoorn, M. G. A., Munir, R., Sussman, G., Stad, R., de Haan, M., van der Hoeven, T., Rauwerda, H., Thallinger, G. & Wadee, A. A., 2008, In : Molecular immunology. 45, 6, p. 1573-1586

Research output: Contribution to journalArticleResearchpeer-review

MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data

Hartler, J., Ubaida Mohien, C., Thallinger, G., Stocker, G., Rader, R., Burkard, T., Colinge, J. & Trajanoski, Z., 2008.

Research output: Contribution to conferencePosterResearch

MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data

Hartler, J., Ubaida Mohien, C., Thallinger, G., Stocker, G., Rader, R., Burkard, T., Colinge, J. & Trajanoski, Z., 2008.

Research output: Contribution to conferencePosterResearch

Second Year Report, Bioinformatics Integration Network II

Thallinger, G., Eisenhaber, F., von Haeseler, A., Hofacker, I., Djinovic-Carugo, K., Tilg, B. & Trajanoski, Z., 2008, .

Research output: Book/ReportOther reportResearch

2009

Expression of eukaryotic membrane proteins in Pichia Pastoris - HTP tools and molecular impact

Freigaßner, M. E., Thallinger, G., Drew, D., Cregg, J. & Glieder, A., 2009.

Research output: Contribution to conferencePosterResearch

Final Report, Bioinformatics Integration Network II

Thallinger, G., Eisenhaber, F., von Haeseler, A., Hofacker, I., Djinovic-Carugo, K., Baumgartner, C. & Trajanoski, Z., 2009, .

Research output: Book/ReportOther reportResearch

Gene Expression Analysis of Peripheral Blood in Patients with Alzheimers's Disease

Thallinger, G., Koontz, J., Fang, L., Trajanoski, Z. & Baskys, A., 2009.

Research output: Contribution to conferencePosterResearch

Introducing mothur: Open Source, Platform-independent, Community-supported Software for Describing and Comparing Microbial Communities

Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D. H., Robinson, C. J., Sahl, J. W., Stres, B., Thallinger, G., Van Horn, D. J. & Weber, C. F., 2009, In : Applied and Environmental Microbiology. 75, 23, p. 7537-7541

Research output: Contribution to journalArticleResearchpeer-review

Lipid Data Analyzer: Automated Identification and Quantitation of Lipid Species in LC-MS data

Hartler, J., Trötzmüller, M., Eberl, A., Köfeler, H. C., Trajanoski, Z. & Thallinger, G., 2009.

Research output: Contribution to conferencePosterResearch

Novel functional profiling approach combining reverse phase protein microarrays and human 3-D ex vivo tissue cultures: expression of apoptosis-related proteins in human colon cancer

Pirnia, F., Pawlak, M., Thallinger, G., Gierke, B., Templin, M. F., Kappeler, A., Betticher, D. C., Gloor, B. & Borner, M. M., 2009, In : Proteomics. 9, 13, p. 3535-3548

Research output: Contribution to journalArticleResearchpeer-review

QPCR: Application for real-time PCR data management and analysis

Pabinger, S., Thallinger, G., Snajder, R., Eichhorn, H., Rader, R. & Trajanoski, Z., 2009, In : BMC Bioinformatics . 10, p. 268-268

Research output: Contribution to journalArticleResearchpeer-review

Revealing cellular responses on membrane protein production in Pichia Pastoris

Küberl, A., Freigaßner, M. E., Thallinger, G., Cregg, J. & Glieder, A., 2009.

Research output: Contribution to conferencePosterResearch

Sequencing and Annotating Pichia pastoris CBS7435

Küberl, A., Thallinger, G., Schwab, H. & Pichler, H., 2009.

Research output: Contribution to conferencePosterResearch