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Christian Baumgartner

Univ.-Prof. Dipl.-Ing. Dr.techn.

1976 …2022
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Research Output 1996 2019

2010

Effect of data predictive modeling: a study using gene expression data

Osl, M., Dreiseitl, S., Kim, J., Patel, K., Baumgartner, C. & Ohno-Machado, L., 13 Nov 2010.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Ensemble Feature Selection in Biomedical Applications

Netzer, M. & Baumgartner, C., 2010, Database Technology for Life Sciences and Medicine. 1 ed. World Scientific Publishing, Vol. Volume 6. p. 221-239 (Science, Engineering, and Biology Informatics).

Research output: Chapter in Book/Report/Conference proceedingChapterResearch

Erkennung von Kniegelenksfehlbelastungen mittels einfacher Sensoren

Hanser, F. & Baumgartner, C., 3 Nov 2010.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Erkennung von Kniegelenksfehlbelastungen mittels einfacher Sensoren

Hanser, F. & Baumgartner, C., 2010, Tagungsband 6. Int. Mechatronikforum. ., p. 1-14

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Evaluation of Heuristics for Rule Ranking

Dreiseitl, S., Osl, M., Baumgartner, C. & Vinterbo, S., 2010, In : Artificial Intelligence in Medicine. 50, 3, p. 175-180

Research output: Contribution to journalArticleResearchpeer-review

MUDE: A new approach for optimizing sensitivity in the target-decoy search strategy for large-scale peptide/protein identification

Cerqueira, F. R., Graber, A., Schwikowski, B. & Baumgartner, C., 2010, In : Journal of proteome research. 9, 5, p. 2265-2277

Research output: Contribution to journalArticleResearchpeer-review

Non-invasive diagnosis of liver diseases by breath analysis using an optimized ion-molecule reaction-mass spectrometry approach: a pilot study

Millonig, G., Praun, S., Netzer, M., Baumgartner, C., Dornauer, A. P., Müller, S., Villinger, J. & Vogel, W., 2010, In : Biomarkers. 15, 4, p. 297-306

Research output: Contribution to journalArticleResearchpeer-review

2009

An Epidemiologic Modeling and data integration framework

Pfeifer, B., Seger, M., Netzer, M., Osl, M., Tilg, B., Modre-Osprian, R., Schreier, G., Hanser, F. & Baumgartner, C., 7 May 2009.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

An Epidemiologic Modeling and data integration framework

Pfeifer, B., Seger, M., Netzer, M., Osl, M., Tilg, B., Modre-Osprian, R., Schreier, G., Hanser, F. & Baumgartner, C., 2009, Tagungsband der eHealth2009 und eHealth Benchmarking 2009. ., p. 1-7

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

A new ensemble based algorithm for identifying breath gas marker candidates in liver disease using ion molecule reaction mass spectrometry

Netzer, M., Millonig, G., Osl, M., Pfeifer, B., Praun, S., Villinger, J., Vogel, W. & Baumgartner, C., 2009, In : Bioinformatics. 25, 7, p. 941-947

Research output: Contribution to journalArticleResearchpeer-review

Classifier Combination

Osl, M., Baumgartner, C. & Dreiseitl, S., 2009, Biomedical and Environmental Sensing. 1 ed. Aalborg: River Publishers, p. 279-294

Research output: Chapter in Book/Report/Conference proceedingChapterResearch

Demoting redundant features to improve the discriminatory ability in cancer data

Osl, M., Dreiseitl, S., Cerqueira, F. R., Netzer, M., Pfeifer, B. & Baumgartner, C., 2009, In : Journal of biomedical informatics. 42, 4, p. 721-725

Research output: Contribution to journalArticleResearchpeer-review

Early Surgery in Patients with Coarcation of the Aorta Does Not Improve Impaired Elastic Properties of the Ascending Aorta in Midterm Follow-Up: A Longitudinal Prospective Study

Kühn, A., Baumgartner, D., Baumgartner, C., Hörer, J., Schreiber, C., Hess, J. & Vogt, M., 2009, In : Pediatric cardiology. 30, p. 46-51

Research output: Contribution to journalArticleResearchpeer-review

Evaluation of the impact of dataset characteristics for classification problems in biological applications

Kusonmano, K., Netzer, M., Pfeifer, B., Baumgartner, C., Liedl, K. R. & Graber, A., 2009, Proc International Conference on Bioinformatics and Biomedicine. World Academy of Science, Engineering and Technology, Vol. Volume 3. p. 966-990

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Evaluation of the impact of dataset characteristics for classification problems in biological applications

Kusonmano, K., Netzer, M., Pfeifer, B., Baumgartner, C., Liedl, K. R. & Graber, A., 26 Oct 2009.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Improving phosphopeptide/protein identification using a new data mining framework for MS/MS spectra preprocessing

Cerqueira, F. R., Morandell, S., Ascher, S., Mechtler, K., Huber, L., Pfeifer, B., Graber, A., Tilg, B. & Baumgartner, C., 2009, In : Kritischer Verlag! Journal of Proteomics and Bioinformatics. 2, 3, p. 150-165

Research output: Contribution to journalArticleResearch

Integrative Approach for Combining TNFα-NFκB Mathematical Model to a Protein Interaction Connectivity Map

Visvanathan, M., Pfeifer, B., Baumgartner, C. & Lushington, G. H., 2009, Bioinformatics Research and Applications. 1 ed. Berlin Heidelberg: Springer Verlag, Vol. 5542. p. 63-74 (Lecture Notes in Computer Science).

Research output: Chapter in Book/Report/Conference proceedingChapterResearch

Oncogene Identification using Filter based Approaches between Various Cancer Types in Lung

Netzer, M., Seger, M., Visvanathan, M., Lushington, G. H., Pfeifer, B. & Baumgartner, C., 26 Oct 2009.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Oncogene Identification using Filter based Approaches between Various Cancer Types in Lung

Netzer, M., Seger, M., Visvanathan, M., Lushington, G. H., Pfeifer, B. & Baumgartner, C., 2009, Proc International Conference on Bioinformatics and Biomedicine. World Academy of Science, Engineering and Technology, Vol. Volume 3. p. 1062-1066

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Oncogenes and pathway identification using filter based approaches between various carcinoma types in lung

Visvanathan, M., Netzer, M., Seger, M., Adagarla, B. S., Baumgartner, C., Sittampalam, S. & Lushington, G. H., 2009, In : International journal of computational biology and drug design. 2, 3, p. 236-251

Research output: Contribution to journalArticleResearchpeer-review

Online breath sampling with PTR-MS – A setup for large screening studies

Herwig, J., Seger, M., Kohl, I., Mayramhof, G., Titzmann, T., Preinfalk, A., Winkler, K., Dunkl, J., Pfeifer, B., Baumgartner, C. & Hansel, A., 16 Feb 2009.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Online breath sampling with PTR-MS – A setup for large screening studies

Herwig, J., Seger, M., Kohl, I., Mayramhof, G., Titzmann, T., Preinfalk, A., Winkler, K., Dunkl, J., Pfeifer, B., Baumgartner, C. & Hansel, A., 2009, Proc. 4th Int. Conf. on Proton Transfer Reaction Mass Spectrometry and Its Applications. ., p. 46-50

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

On the combination of logistic regression and local probability estimates

Osl, M., Baumgartner, C., Tilg, B. & Dreiseitl, S., 2009, In : African Journal of Information and Communication Technology . 5, 2, p. 84-90

Research output: Contribution to journalArticleResearchpeer-review

Stacked Feature Selection in Liver Disease using IMR-MS analysis

Netzer, M., Millonig, G., Pfeifer, B., Kusonmano, K., Praun, S., Villinger, J., Vogel, W. & Baumgartner, C., 2009, Proc Database and Expert Systems Application, DEXA 2009. ., p. 333-337

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Stacked Feature Selection in Liver Disease using IMR-MS analysis

Netzer, M., Millonig, G., Pfeifer, B., Kusonmano, K., Praun, S., Villinger, J., Vogel, W. & Baumgartner, C., 31 Aug 2009.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

2008

A Cellular Automation Framework for Infectious Disease Spread Simulation

Pfeifer, B., Kugler, K. G., Tejada, M. M., Baumgartner, C., Seger, M., Osl, M., Netzer, M., Handler, M., Dander, A., Wurz, M., Graber, A. & Tilg, B., 2008, In : The open medical informatics journal. 2, p. 70-81

Research output: Contribution to journalArticleResearchpeer-review

A Modeling Framework for Simulating Contagious Diseases in Populations

Pfeifer, B., Kugler, K. G., Tejada, M. M., Baumgartner, C., Seger, M., Graber, A. & Tilg, B., 25 Jun 2008.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

A Modeling Framework for Simulating Contagious Diseases in Populations

Pfeifer, B., Kugler, K. G., Tejada, M. M., Baumgartner, C., Seger, M., Graber, A. & Tilg, B., 2008, IFMBE Proceedings 2008. Springer Berlin - Heidelberg, Vol. Volume 21. p. 270-274 (BIOMED 2008, 25-28 June 2008, Kuala Lumpur, Malaysia).

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

A new rule-based data mining algorithm for identifying metabolic markers in prostate cancer using tandem mass spectrometry

Osl, M., Dreiseitl, S., Pfeifer, B., Weinberger, K. M., Klocker, H., Bartsch, G., Schäfer, G., Tilg, B., Graber, A. & Baumgartner, C., 2008, In : Bioinformatics. 24, 24, p. 2908-2814

Research output: Contribution to journalArticleResearchpeer-review

Beta-elimination of disulfide bridges: a common sample preparation induced protein modification

Rejtar, T., Baumgartner, C., Kullolli, M. & Karger, B. L., 2008.

Research output: Contribution to conferenceAbstractResearchpeer-review

Beta-elimination of disulfide bridges: a common sample preparation induced protein modification

Rejtar, T., Baumgartner, C., Kullolli, M. & Karger, B. L., 2 Jun 2008.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Bridging data management and knowledge discovery in the life sciences

Kugler, K. G., Tejada, M. M., Baumgartner, C., Tilg, B., Graber, A. & Pfeifer, B., 2008, In : The open bioinformatics journal . 2, p. 28-36

Research output: Contribution to journalArticleResearchpeer-review

DMSP - Database for Modeling Signaling Pathways. Combining biological and mathematical modeling knowledge for pathways

Visvanathan, M., Breit, M., Pfeifer, B., Baumgartner, C., Modre-Osprian, R. & Tilg, B., 2008, In : Methods of information in medicine. 47, 2, p. 140-148

Research output: Contribution to journalArticleResearchpeer-review

Improving Calibration of Logistic Regression Models by Local Estimates

Osl, M., Ohno-Machado, L., Baumgartner, C., Tilg, B. & Dreiseitl, S., 8 Nov 2008.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Improving Calibration of Logistic Regression Models by Local Estimates

Osl, M., Ohno-Machado, L., Baumgartner, C., Tilg, B. & Dreiseitl, S., 2008, AMIA Annu Symp Proc. ., p. 535-539

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Metabolite profiling of blood from individuals undergoing planned myocardial infarction reveals early markers of myocardial injury

Lewis, G. D., Wei, R., Liu, E., Yang, E., Shi, X., Martinovic, M., Farrell, L., Asnani, A., Cyrille, M., Ramanathan, A., Shaham, O., Berriz, G., Lowry, P. A., Palacios, I. F., Taşan, M., Roth, F. P., Min, J., Baumgartner, C., Keshishian, H., Addona, T. & 6 othersMootha, V. K., Rosenzweig, A., Carr, S. A., Fifer, M. A., Sabatine, M. S. & Gerszten, R. E., 2008, In : The journal of clinical investigation. 118, 10, p. 3503-3512

Research output: Contribution to journalArticleResearchpeer-review

On the combination of logistic regression and local probability estimates

Osl, M., Baumgartner, C., Tilg, B. & Dreiseitl, S., 23 Nov 2008.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

On the combination of logistic regression and local probability estimates

Osl, M., Baumgartner, C., Tilg, B. & Dreiseitl, S., 2008, Proceedings -  3rd International Conference on Broadband Communications, Information Technology & Biomedical Applications. ., p. 124-128 4696097

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

SeMoP: A New Computational Strategy for the Unrestricted Search for Modified Peptides Using LC-MS/MS Data

Baumgartner, C., Rejtar, T., Kullolli, M., Akella, L. M. & Karger, B. L., 2008, In : Journal of proteome research. 7, 9, p. 4199-4208

Research output: Contribution to journalArticleResearchpeer-review

2007

A data warehouse for prostate cancer biomarker discovery

Pfeifer, B., Aschaber, J., Baumgartner, C., Dreiseitl, S., Modre-Osprian, R., Schreier, G. & Tilg, B., 27 Jun 2007.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

A data warehouse for prostate cancer biomarker discovery

Pfeifer, B., Aschaber, J., Baumgartner, C., Dreiseitl, S., Modre-Osprian, R., Schreier, G. & Tilg, B., 2007, Data Integration in the Life Sciences: 4th International Workshop, DILS 2007, Philadelphia, PA, USA, June 27-29, 2007, Proceedings. Heidelberg: Springer Verlag, Vol. 4544. p. 9-15 (Lecture Notes in Computer Science/Lecture Notes in Bioinformatics).

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

A Data Warehouse for Prostate Cancer Biomarker Discovery

Pfeifer, B., Aschaber, J., Baumgartner, C., Dreiseitl, S., Modre-Osprian, R., Schreier, G. & Tilg, B., 25 Jun 2007.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

A Data Warehouse for Prostate Cancer Biomarker Discovery

Pfeifer, B., Aschaber, J., Baumgartner, C., Dreiseitl, S., Modre-Osprian, R., Schreier, G. & Tilg, B., 2007, Proceedings of The 2007 International Conference on Bioinformatics and Computational Biology. CSREA Press, p. 323-327

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Data mining and knowledge discovery in metabolomics

Baumgartner, C. & Graber, A., 2007, Successes and new directions in data mining. 1 ed. Hershey: Information Science Reference - Imprint of: IGI Publishing, p. 141-166

Research output: Chapter in Book/Report/Conference proceedingChapterResearch

Integration biomedizinischer Daten in einer klinischen Bioinformatik Plattform

Pfeifer, B., Baumgartner, C., Plant, C., Modre-Osprian, R., Schreier, G. & Tilg, B., 1 Jun 2007.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

Integration biomedizinischer Daten in einer klinischen Bioinformatik Plattform

Pfeifer, B., Baumgartner, C., Plant, C., Modre-Osprian, R., Schreier, G. & Tilg, B., 2007, Tagungsband der eHealth2007. ., p. 1-4

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

2006

A bioinformatics framework for genotype-phenotype correlation in humans with Marfan syndrome caused by FBN1 gene mutations

Baumgartner, C., Mátyás, G., Steinmann, B., Eberle, M., Stein, J. I. & Baumgartner, D., 2006, In : Journal of biomedical informatics. 39, 2, p. 171-183

Research output: Contribution to journalArticleResearchpeer-review

A Systems Biology Approach for Genotype-Phenotype Correlation in the Marfan Syndrome

Baumgartner, C., Pfeifer, B., Tilg, B., Mátyás, G., Stein, J. I. & Baumgartner, D., 15 Oct 2006.

Research output: Contribution to conference(Old data) Lecture or PresentationResearch

A Systems Biology Approach for Genotype-Phenotype Correlation in the Marfan Syndrome

Baumgartner, C., Pfeifer, B., Tilg, B., Mátyás, G., Steinmann, B., Stein, J. I. & Baumgartner, D., 2006.

Research output: Contribution to conferenceAbstractResearchpeer-review

Biomarker discovery, disease classification and similarity query processing on high-throughput MS/MS data of inborn errors of metabolism

Baumgartner, C. & Baumgartner, D., 2006, In : Journal of biomolecular screening. 11, 1, p. 90-99

Research output: Contribution to journalArticleResearchpeer-review