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Research Output 1979 2019

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2013

Whatever works: A systematic user-centered training protocol to optimize brain-computer interfacing individually

Friedrich, E., Neuper, C. & Scherer, R., 2013, In : PLoS ONE. p. 1-11

Research output: Contribution to journalArticleResearchpeer-review

2014

A co-adaptive brain-computer interface for end users with severe motor impairment

Faller, J., Scherer, R., Costa, U., Opisso, E., Medina, J. & Müller-Putz, G., 2014, In : PLoS ONE. 9, 7, p. 1-10

Research output: Contribution to journalArticleResearchpeer-review

An independent SSVEP-based brain-computer interface in locked-in syndrome

Lesenfants, D., Habbal, D., Lugo, Z., Lebeau, M., Horki, P., Amico, E., Pokorny, C., Gomez, F., Soddu, A., Müller-Putz, G., Laureys, S. & Noirhomme, Q., 2014, In : Journal of neural engineering. 11, 3, 035002.

Research output: Contribution to journalArticleResearchpeer-review

A novel cohort of cancer-testis biomarker genes revealed through meta-analysis of clinical data sets

Sammut, S. J., Feichtinger, J., Stuart, N., Wakeman, J. A., Larcombe, L. D. & McFarlane, R. J., 2014, In : Oncoscience . 1, 5, p. 349-359

Research output: Contribution to journalArticleResearchpeer-review

A novel stable isotope labelling assisted workflow for improved untargeted LC-HRMS based metabolomics research

Bueschl, C., Kluger, B., Lemmens, M., Adam, G., Wiesberger, G., Maschietto, V., Marocco, A., Strauss, J., Bödi, S., Thallinger, G., Krska, R. & Schuhmacher, R., 2014, In : Metabolomics. 10, 4, p. 754-769

Research output: Contribution to journalArticleResearchpeer-review

A physicians' wish list for the clinical application of intestinal metagenomics

Klymiuk, I., Högenauer, C., Halwachs, B., Thallinger, G., Fricke, F. W. & Steininger, C., 2014, In : PLoS medicine. 11, 4, p. e1001627-e1001627

Research output: Contribution to journalArticleResearchpeer-review

Assessment of lipidomic species in hepatocyte lipid droplets from stressed mouse models

Hartler, J., Köfeler, H., Trötzmüller, M., Thallinger, G. & Spener, F., 2014, In : Scientific Data . 1, 140051, p. 1-12

Research output: Contribution to journalArticleResearchpeer-review

A Tactile Stimulation Device for EEG Measurements in Clinical Use

Pokorny, C., Breitwieser, C. & Müller-Putz, G., 2014, In : IEEE Transactions on Biomedical Circuits and Systems. 8, 3, p. 305-312

Research output: Contribution to journalArticleResearchpeer-review

CancerEST: a web-based tool for automatic meta-analysis of public EST data.

Feichtinger, J., McFarlane, R. J. & Larcombe, L. D., 2014, In : Database - The Journal of Biological Databases and Curation . 2014, p. bau024-bau024

Research output: Contribution to journalArticleResearchpeer-review

Cancer germline gene activation: friend or foe?

McFarlane, R. J., Feichtinger, J. & Larcombe, L. D., 2014, In : Cell Cycle. 13, 14, p. 2151-2152

Research output: Contribution to journalArticleResearchpeer-review

Co-expressed genes prepositioned in spatial neighborhoods stochastically associate with SC35 speckles and RNA polymerase II factories

Rieder, D., Ploner, C., Krogsdam, A., Stocker, G., Fischer, M., Scheideler, M., Dani, C., Amri, E-Z., McNally, J. & Trajanoski, Z., 2014, In : Cellular and Molecular Life Sciences. 71, 9, p. 1741-1759

Research output: Contribution to journalArticleResearchpeer-review

Comparative Genome Analysis of Campylobacter fetus Subspecies Revealed Horizontally Acquired Genetic Elements Important for Virulence and Niche Specificity

Kienesberger, S., Sprenger, H., Wolfgruber, S., Halwachs, B., Thallinger, G., Perez-Perez, G. I., Blaser, M. J., Zechner, E. & Gorkiewicz, G., 2014, In : PLoS ONE. 9, 1, p. e85491-e85491

Research output: Contribution to journalArticleResearchpeer-review

Deciphering the molecular profile of plaques, memory decline and neuron loss in two mouse models for Alzheimer’s disease by deep sequencing

Albrecht, M., Bouter, Y., Kacprowski, T., Weissmann, R., Dietrich, K., Borgers, H., Brauß, A., Sperling, C., Wirths, O., Jensen, L. R., Kuss, A. W. & Bayer, T. A., 2014, In : Frontiers in Aging Neuroscience . 6, 4, p. 75.1-75.28

Research output: Contribution to journalArticleResearchpeer-review

Detection of mental imagery and attempted movements in patients with disorders of consciousness using EEG

Horki, P., Bauernfeind, G., Klobassa, D. S., Pokorny, C., Pichler, G., Schippinger, W. & Müller-Putz, G., 2014, In : Frontiers in Human Neuroscience. 8, 1009, p. 1-9

Research output: Contribution to journalArticleResearchpeer-review

EEG beta suppression and low gamma modulation are different elements of human upright walking

Seeber, M., Scherer, R., Wagner, J., Solis Escalante, T. & Müller-Putz, G., 2014, In : Frontiers in Human Neuroscience. 8, 485.

Research output: Contribution to journalArticleResearchpeer-review

Effects of mental workload and fatigue on the P300, alpha and theta band power during operation of an ERP (P300) brain-computer interface

Käthner, I., Wriessnegger, S., Müller-Putz, G., Halder, S. & Kübler, A., 2014, In : Biological Psychology. 102, p. 118-129

Research output: Contribution to journalArticleResearchpeer-review

Enhanced whole genome sequence and annotation of Clostridium stercorarium DSM8532T using RNA-seq transcriptomics and high-throughput proteomics

Schellenberg, J. J., Verbeke, T. J., McQueen, P., Krokhin, O. V., Zhang, X., Alvare, G., Fristensky, B., Thallinger, G., Henrissat, B., Wilkins, J. A., Levin, D. B. & Sparling, R., 2014, In : BMC Genomics . 15, 1, p. 567-567

Research output: Contribution to journalArticleResearchpeer-review

Entrainment of spontaneous cerebral hemodynamic oscillations to behavioral responses

Pfurtscheller, G., Walther, M., Bauernfeind, G., Barry, R. J., Witte, H. & Müller-Putz, G., 2014, In : Neuroscience letters. 566, p. 93-97

Research output: Contribution to journalArticleResearchpeer-review

Exploration of the neural correlates of cerebral palsy for sensorimotor BCI control

Daly, I., Faller, J., Scherer, R., Sweeney-Reed, C., Slawomir, N., Billinger, M. & Müller-Putz, G., 2014, In : Frontiers in Neuroengineering . 7, 7:20.

Research output: Contribution to journalArticleResearchpeer-review

Finished Genome Sequence of Escherichia coli K-12 Strain HMS174 (ATCC 47011)

Mairhofer, J., Krempl, P., Thallinger, G. & Striedner, G., 2014, In : Genome Announcements. 2, 6, p. e00975-14-e00975-14

Research output: Contribution to journalArticleResearchpeer-review

Finished Genome Sequence of the Laboratory Strain Escherichia coli K-12 RV308 (ATCC 31608).

Krempl, P., Mairhofer, J., Striedner, G. & Thallinger, G., 2014, In : Genome Announcements. 2, 6, p. e00971-14-e00971-14

Research output: Contribution to journalArticleResearchpeer-review

Identification of a class of human cancer germline genes with transcriptional silencing refractory to the hypomethylating drug 5-aza-2ˈ-deoxycytidine

Almatrafi, A., Feichtinger, J., Vernon, E. G., Gomez Escobar, N., Wakeman, J. A., Larcombe, L. D. & McFarlane, R. J., 2014, In : Oncoscience . 1, 11, p. 745-750

Research output: Contribution to journalArticleResearchpeer-review

Improving ITS sequence data for identification of plant pathogenic fungi

Nilsson, R. H., Hyde, K. D., Pawłowska, J., Ryberg, M., Tedersoo, L., Aas, A. B., Alias, S. A., Alves, A., Anderson, C. L., Antonelli, A., Arnold, A. E., Bahnmann, B., Bahram, M., Bengtsson-Palme, J., Berlin, A., Branco, S., Chomnunti, P., Dissanayake, A., Drenkhan, R., Friberg, H. & 39 othersFrøslev, T. G., Halwachs, B., Hartmann, M., Henricot, B., Jayawardena, R., Jumpponen, A., Kauserud, H., Koskela, S., Kulik, T., Liimatainen, K., Lindahl, B. D., Lindner, D., Liu, J-K., Maharachchikumbura, S., Manamgoda, D., Martinsson, S., Neves, M. A., Niskanen, T., Nylinder, S., Pereira, O. L., Pinho, D. B., Porter, T. M., Queloz, V., Riit, T., Sánchez-García, M., Sousa de, F., Stefańczyk, E., Tadych, M., Takamatsu, S., Tian, Q., Udayanga, D., Unterseher, M., Wang, Z., Wikee, S., Yan, J., Larsson, E., Larsson, K-H., Kõljalg, U. & Abarenkov, K., 2014, In : Fungal diversity. p. 1-9

Research output: Contribution to journalArticleResearchpeer-review

Initiation of voluntary movements at free will and ongoing 0.1-Hz BOLD oscillations in the insula – a pilot study

Pfurtscheller, G., Andrade, A., Koschutnig, K., Brunner, C. & Lopes Da Silva, F. H., 2014, In : Frontiers in Integrative Neuroscience . 8, 93.

Research output: Contribution to journalArticleResearchpeer-review

Integrative omics analysis. A study based on Plasmodium falciparum mRNA and protein data.

Tomescu, O. A., Mattanovich, D. & Thallinger, G., 2014, In : BMC Systems Biology. 8, Suppl. 2, p. S4-S4

Research output: Contribution to journalArticleResearchpeer-review

Integrative visual analysis of protein sequence mutations

Doncheva, N. T., Klein, K., Morris, J. H., Wybrow, M., Domingues, F. S. & Albrecht, M., 2014, In : BMC Proceedings. 8, Suppl. 2, p. S2.1-S2.11

Research output: Contribution to journalArticleResearchpeer-review

It's how you get there: walking down a virtual alley activates premotor and parietal areas

Wagner, J., Solis Escalante, T., Scherer, R., Neuper, C. & Müller-Putz, G., 2014, In : Frontiers in Human Neuroscience. p. 1-11

Research output: Contribution to journalArticleResearchpeer-review

Meta-analysis of expression of l(3)mbt tumor-associated germline genes supports the model that a soma-to-germline transition is a hallmark of human cancers

Feichtinger, J., Larcombe, L. D. & McFarlane, R. J., 2014, In : International journal of cancer. 134, 10, p. 2359-2365

Research output: Contribution to journalArticleResearchpeer-review

MicroRNA-26 family is required for human adipogenesis and drives brown adipocytes characteristics

Karbiener, M., Pisani, D., Frontini, A., Oberreiter, L. M., Lang, E., Vegiopoulos, A., Mössenböck, K., Bernhardt, G., Mayr, T., Hildner, F., Grillari, J., Ailhaud, G., Herzig, S., Cinti, S., Amri, E-Z. & Scheideler, M., 2014, In : Stem cells. 32, 6, p. 1578-1590

Research output: Contribution to journalArticleResearchpeer-review

Mind over brain, brain over mind: cognitive causes and consequences of controlling brain activity

Friedrich, E., Wood, G., Scherer, R. & Neuper, C., 2014, In : Frontiers in Human Neuroscience. p. 1-2

Research output: Contribution to journalArticleResearchpeer-review

Motor imagery induced EEG patterns in spinal cord injury patients and their impact on Brain-Computer Interface accuracy

Müller-Putz, G., Daly, I. & Kaiser, V., 2014, In : Journal of neural engineering. 11, 3, 035011.

Research output: Contribution to journalArticleResearchpeer-review

Non motor tasks improve adaptive brain-computer interface performance in users with severe motor impairment

Faller, J., Scherer, R., Friedrich, E., Costa, U., Opisso, E., Medina, J. & Müller-Putz, G., 2014, In : Frontiers in neuroprosthetics . 8, 320

Research output: Contribution to journalArticleResearchpeer-review

NR4A1-mediated apoptosis supresses lymphomagenesis and is associated with a favorable cancer specific survival in patients with aggressive B-cell lymphomas

Deutsch, A., Rinner, B., Wenzl, K., Pichler, M., Troppan, K., Steinbauer, E., Schwarzenbacher, D., Reitter, S., Feichtinger, J., Tierling, S., Prokesch, A., Scheideler, M., Krogsdam, A., Thallinger, G., Schaider, H., Beham-Schmid, C. & Neumeister, P., 2014, In : Blood. 123, 15, p. 2367-2377

Research output: Contribution to journalArticleResearchpeer-review

Peroxidase gene discovery from the horseradish transcriptome

Näätsaari, L., Krainer, F., Schubert, M., Glieder, A. & Thallinger, G., 2014, In : BMC Genomics . 15, 1, p. 227-227

Research output: Contribution to journalArticleResearchpeer-review

Quantitation of phosphatidic acid and lysophosphatidic acid molecular species using hydrophilic interaction liquid chromatography coupled to electrospray ionization high resolution mass spectrometry

Triebl, A., Trötzmüller, M., Eberl, A., Hanel, P., Hartler, J. & Köfeler, H., 2014, In : Journal of chromatography / A. 1347, p. 104-110

Research output: Contribution to journalArticleResearchpeer-review

Resolving tumor heterogeneity: genes involved in chordoma cell development identified by low-template analysis of morphologically distinct cells

El-Heliebi, A., Kroneis, T., Wagner, K., Meditz, K., Kolb, D., Feichtinger, J., Thallinger, G., Quehenberger, F., Liegl-Atzwanger, B. & Rinner, B., 2014, In : PLoS ONE. 9, 2, p. e87663-e87663

Research output: Contribution to journalArticleResearchpeer-review

SCoT: a Python toolbox for EEG source connectivity

Billinger, M., Brunner, C. & Müller-Putz, G., 2014, In : Frontiers in neuroinformatics. 8, p. 22-22

Research output: Contribution to journalArticleResearchpeer-review

Separating heart and brain: On the reduction of physiological noise from multichannel functional near-infrared spectroscopy (fNIRS) signals

Bauernfeind, G., Wriessnegger, S., Daly, I. & Müller-Putz, G., 2014, In : Journal of neural engineering. 11, 5, p. 056010-056010

Research output: Contribution to journalArticleResearchpeer-review

setsApp: Set operations for Cytoscape nodes and edges

Morris, J. H., Wu, A., Doncheva, N. T., Albrecht, M. & Ferrin, T. E., 2014, In : Faculty of 1000 Research. 3, p. 149.1-149.10

Research output: Contribution to journalArticleResearchpeer-review

Short time sports exercise boosts motor imagery patterns: implications of mental practice in rehabilitation programs

Wriessnegger, S., Steyrl, D., Koschutnig, K. & Müller-Putz, G., 2014, In : Frontiers in Human Neuroscience. 8, p. 1-9

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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Stenotrophomonas comparative genomics reveals genes and functions that differentiate beneficial and pathogenic bacteria

Alavi, M., Starcher, M., Thallinger, G., Zachow, C., Müller, H. & Berg, G., 2014, In : BMC Genomics . 151, p. 482-482

Research output: Contribution to journalArticleResearchpeer-review

The mzTab Data Exchange Format: communicating MS-based proteomics and metabolomics experimental results to a wider audience

Griss, J., Jones, A. R., Sachsenberg, T., Walzer, M., Laurent, G., Hartler, J., Thallinger, G., Salek, R. M., Steinbeck, C., Nadin, N., Cox, J., Neumann, S., Fan, J., Reisinger, F., Qing-Wei, X., del Toro, N., Perez-Riverol, Y., Ghali, F., Bandeira, N., Xenarios, I. & 3 othersKohlbacher, O., Vizcaino, J. A. & Henning, H., 2014, In : Molecular & cellular proteomics. 13, 10, p. 2765-2775

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

The Sphagnum microbiome supports bog ecosystem functioning under extreme conditions.

Bragina, A., Oberauner-Wappis, L., Zachow, C., Halwachs, B., Thallinger, G., Müller, H. & Berg, G., 2014, In : Molecular ecology. 23, 18, p. 4489-4851

Research output: Contribution to journalArticleResearchpeer-review

Towards improved membrane protein production in Pichia pastoris: general and specific transcriptional response to membrane protein overexpression

Vogl, T., Thallinger, G., Zellnig, G., Drew, D., Cregg, J., Glieder, A. & Freigaßner, M. E., 2014, In : New biotechnology. 31, 6, p. 538-552

Research output: Contribution to journalArticleResearchpeer-review

Untargeted profiling of tracer-derived metabolites using stable isotopic labeling and fast polarity-switching LC-ESI-HRMS

Kluger, B., Bueschl, C., Neumann, N., Stückler, R., Doppler, M., Chassy, A. W., Waterhouse, A. L., Rechthaler, J., Kampleitner, N., Thallinger, G., Adam, G., Krska, R. & Schuhmacher, R., 2014, In : Analytical Chemistry. 86, 23, p. 11533-11537

Research output: Contribution to journalArticleResearchpeer-review

Workshops of the Fifth International Brain-Computer Interface Meeting: Defining the Future

Huggins, J. E., Guger, C., Allison, B. Z., Anderson, C. W., Batista, A., Brouwer, A-M., Brunner, C., Chavarriaga, R., Fried-Oken, M., Gunduz, A., Gupta, D., Kübler, A., Leeb, R., Lotte, F., Miller, L. E., Müller-Putz, G., Rutkowski, T., Tangermann, M. & Thompson, D. E., 2014, In : Brain-Computer Interfaces. 1, p. 27-49

Research output: Contribution to journalArticleResearchpeer-review

2015

3DSpectra: A 3-Dimensional Quantification Algorithm For LC-MS Labeled Profile

Nasso, S., Hartler, J., Trajanoski, Z., Di Camillo, B., Mechtler, K. & Toffolo, G., 2015, In : Journal of proteomics. 112, p. 156-165

Research output: Contribution to journalArticleResearchpeer-review

BNCI Horizon 2020: Towards a Roadmap for the BCI Community

Brunner, C., Birbaumer, N., Blankertz, B., Guger, C., Kübler, A., Mattia, D., Millán, J. D. R., Miralles, F., Nijholt, A., Opisso, E., Ramsey, N., Salomon, P. & Müller-Putz, G., 2015, In : Brain-Computer Interfaces. 2, 1, p. 1-10

Research output: Contribution to journalArticleResearchpeer-review

Brain Computer Interface on Track to Home

Miralles, F., Vargiu, E., Dauwalder, S., Sola, M., Müller-Putz, G., Pinegger, A., Wriessnegger, S. & Kübler, A., 2015, In : The Scientific World Journal . 2015, 623896.

Research output: Contribution to journalArticleResearchpeer-review

Brain-controlled applications using dynamic P300 speller matrices

Halder, S., Pinegger, A., Käthner, I., Wriessnegger, S., Faller, J., Antunes, J., Müller-Putz, G. & Kübler, A., 2015, In : Artificial Intelligence in Medicine. 63, 1, p. 7-17

Research output: Contribution to journalArticleResearchpeer-review