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Research Output 1979 2019

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2014

Integrative visual analysis of protein sequence mutations

Doncheva, N. T., Klein, K., Morris, J. H., Wybrow, M., Domingues, F. S. & Albrecht, M., 2014, In : BMC Proceedings. 8, Suppl. 2, p. S2.1-S2.11

Research output: Contribution to journalArticleResearchpeer-review

It's how you get there: walking down a virtual alley activates premotor and parietal areas

Wagner, J., Solis Escalante, T., Scherer, R., Neuper, C. & Müller-Putz, G., 2014, In : Frontiers in Human Neuroscience. p. 1-11

Research output: Contribution to journalArticleResearchpeer-review

Meta-analysis of expression of l(3)mbt tumor-associated germline genes supports the model that a soma-to-germline transition is a hallmark of human cancers

Feichtinger, J., Larcombe, L. D. & McFarlane, R. J., 2014, In : International journal of cancer. 134, 10, p. 2359-2365

Research output: Contribution to journalArticleResearchpeer-review

MicroRNA-26 family is required for human adipogenesis and drives brown adipocytes characteristics

Karbiener, M., Pisani, D., Frontini, A., Oberreiter, L. M., Lang, E., Vegiopoulos, A., Mössenböck, K., Bernhardt, G., Mayr, T., Hildner, F., Grillari, J., Ailhaud, G., Herzig, S., Cinti, S., Amri, E-Z. & Scheideler, M., 2014, In : Stem cells. 32, 6, p. 1578-1590

Research output: Contribution to journalArticleResearchpeer-review

Mind over brain, brain over mind: cognitive causes and consequences of controlling brain activity

Friedrich, E., Wood, G., Scherer, R. & Neuper, C., 2014, In : Frontiers in Human Neuroscience. p. 1-2

Research output: Contribution to journalArticleResearchpeer-review

Motor imagery induced EEG patterns in spinal cord injury patients and their impact on Brain-Computer Interface accuracy

Müller-Putz, G., Daly, I. & Kaiser, V., 2014, In : Journal of neural engineering. 11, 3, 035011.

Research output: Contribution to journalArticleResearchpeer-review

Non motor tasks improve adaptive brain-computer interface performance in users with severe motor impairment

Faller, J., Scherer, R., Friedrich, E., Costa, U., Opisso, E., Medina, J. & Müller-Putz, G., 2014, In : Frontiers in neuroprosthetics . 8, 320

Research output: Contribution to journalArticleResearchpeer-review

NR4A1-mediated apoptosis supresses lymphomagenesis and is associated with a favorable cancer specific survival in patients with aggressive B-cell lymphomas

Deutsch, A., Rinner, B., Wenzl, K., Pichler, M., Troppan, K., Steinbauer, E., Schwarzenbacher, D., Reitter, S., Feichtinger, J., Tierling, S., Prokesch, A., Scheideler, M., Krogsdam, A., Thallinger, G., Schaider, H., Beham-Schmid, C. & Neumeister, P., 2014, In : Blood. 123, 15, p. 2367-2377

Research output: Contribution to journalArticleResearchpeer-review

Peroxidase gene discovery from the horseradish transcriptome

Näätsaari, L., Krainer, F., Schubert, M., Glieder, A. & Thallinger, G., 2014, In : BMC Genomics . 15, 1, p. 227-227

Research output: Contribution to journalArticleResearchpeer-review

Quantitation of phosphatidic acid and lysophosphatidic acid molecular species using hydrophilic interaction liquid chromatography coupled to electrospray ionization high resolution mass spectrometry

Triebl, A., Trötzmüller, M., Eberl, A., Hanel, P., Hartler, J. & Köfeler, H., 2014, In : Journal of chromatography / A. 1347, p. 104-110

Research output: Contribution to journalArticleResearchpeer-review

Resolving tumor heterogeneity: genes involved in chordoma cell development identified by low-template analysis of morphologically distinct cells

El-Heliebi, A., Kroneis, T., Wagner, K., Meditz, K., Kolb, D., Feichtinger, J., Thallinger, G., Quehenberger, F., Liegl-Atzwanger, B. & Rinner, B., 2014, In : PLoS ONE. 9, 2, p. e87663-e87663

Research output: Contribution to journalArticleResearchpeer-review

SCoT: a Python toolbox for EEG source connectivity

Billinger, M., Brunner, C. & Müller-Putz, G., 2014, In : Frontiers in neuroinformatics. 8, p. 22-22

Research output: Contribution to journalArticleResearchpeer-review

Separating heart and brain: On the reduction of physiological noise from multichannel functional near-infrared spectroscopy (fNIRS) signals

Bauernfeind, G., Wriessnegger, S., Daly, I. & Müller-Putz, G., 2014, In : Journal of neural engineering. 11, 5, p. 056010-056010

Research output: Contribution to journalArticleResearchpeer-review

setsApp: Set operations for Cytoscape nodes and edges

Morris, J. H., Wu, A., Doncheva, N. T., Albrecht, M. & Ferrin, T. E., 2014, In : Faculty of 1000 Research. 3, p. 149.1-149.10

Research output: Contribution to journalArticleResearchpeer-review

Short time sports exercise boosts motor imagery patterns: implications of mental practice in rehabilitation programs

Wriessnegger, S., Steyrl, D., Koschutnig, K. & Müller-Putz, G., 2014, In : Frontiers in Human Neuroscience. 8, p. 1-9

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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Stenotrophomonas comparative genomics reveals genes and functions that differentiate beneficial and pathogenic bacteria

Alavi, M., Starcher, M., Thallinger, G., Zachow, C., Müller, H. & Berg, G., 2014, In : BMC Genomics . 151, p. 482-482

Research output: Contribution to journalArticleResearchpeer-review

The mzTab Data Exchange Format: communicating MS-based proteomics and metabolomics experimental results to a wider audience

Griss, J., Jones, A. R., Sachsenberg, T., Walzer, M., Laurent, G., Hartler, J., Thallinger, G., Salek, R. M., Steinbeck, C., Nadin, N., Cox, J., Neumann, S., Fan, J., Reisinger, F., Qing-Wei, X., del Toro, N., Perez-Riverol, Y., Ghali, F., Bandeira, N., Xenarios, I. & 3 othersKohlbacher, O., Vizcaino, J. A. & Henning, H., 2014, In : Molecular & cellular proteomics. 13, 10, p. 2765-2775

Research output: Contribution to journalArticleResearchpeer-review

Open Access
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The Sphagnum microbiome supports bog ecosystem functioning under extreme conditions.

Bragina, A., Oberauner-Wappis, L., Zachow, C., Halwachs, B., Thallinger, G., Müller, H. & Berg, G., 2014, In : Molecular ecology. 23, 18, p. 4489-4851

Research output: Contribution to journalArticleResearchpeer-review

Towards improved membrane protein production in Pichia pastoris: general and specific transcriptional response to membrane protein overexpression

Vogl, T., Thallinger, G., Zellnig, G., Drew, D., Cregg, J., Glieder, A. & Freigaßner, M. E., 2014, In : New biotechnology. 31, 6, p. 538-552

Research output: Contribution to journalArticleResearchpeer-review

Untargeted profiling of tracer-derived metabolites using stable isotopic labeling and fast polarity-switching LC-ESI-HRMS

Kluger, B., Bueschl, C., Neumann, N., Stückler, R., Doppler, M., Chassy, A. W., Waterhouse, A. L., Rechthaler, J., Kampleitner, N., Thallinger, G., Adam, G., Krska, R. & Schuhmacher, R., 2014, In : Analytical Chemistry. 86, 23, p. 11533-11537

Research output: Contribution to journalArticleResearchpeer-review

Workshops of the Fifth International Brain-Computer Interface Meeting: Defining the Future

Huggins, J. E., Guger, C., Allison, B. Z., Anderson, C. W., Batista, A., Brouwer, A-M., Brunner, C., Chavarriaga, R., Fried-Oken, M., Gunduz, A., Gupta, D., Kübler, A., Leeb, R., Lotte, F., Miller, L. E., Müller-Putz, G., Rutkowski, T., Tangermann, M. & Thompson, D. E., 2014, In : Brain-Computer Interfaces. 1, p. 27-49

Research output: Contribution to journalArticleResearchpeer-review

2013

A Bioinformatics Approach for Integrated Transcriptomic and Proteomic Comparative Analyses of Model and Non-sequenced Anopheline Vectors of Human Malaria Parasites.

Ubaida Mohien, C., Colquhoun, D., Mathias, D., Gibbons, J., Armistead, J., Rodriguez, M., Rodriguez, M., Edwards, N., Hartler, J., Thallinger, G., Graham, D., Martinez-Barnetche, J., Rokas, A. & Dinglasan, R., 2013, In : Molecular & cellular proteomics. 12, 1, p. 120-131

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

A Comparative Analysis of Industrial Escherichia coli K-12 and B Strains in High-Glucose Batch Cultivations on Process-, Transcriptome- and Proteome Level

Marisch, K., Bayer, K., Scharl, T., Mairhofer, J., Krempl, P., Hummel, K., Razzazi-Fazeli, E. & Striedner, G., 2013, In : PLoS ONE. 8, 8, p. e70516-

Research output: Contribution to journalArticleResearchpeer-review

Adipose triglyceride lipase is a TG hydrolase of the small intestine and regulates intestinal PPAR alpha signaling

Obrowsky, S., Chandak, P., Patankar, J., Povoden, S., Schlager, S., Kershaw, E. E., Bogner-Strauß, J. G., Hoefler, G., Levak-Frank, S. & Kratky, D., 2013, In : Journal of lipid research. 54, 2, p. 425-435

Research output: Contribution to journalArticleResearchpeer-review

A hemodynamic brain-computer interface based on real-time classification of near infrared spectroscopy signals during motor imagery and mental arithmetic

Stangl, M., Bauernfeind, G., Kurzmann, J., Scherer, R. & Neuper, C., 2013, In : Journal of near infrared spectroscopy. 21, p. 157-171

Research output: Contribution to journalArticleResearchpeer-review

alpha/beta-Hydrolase Domain Containing Protein 15 (ABHD15) - an Adipogenic Protein Protecting from Apoptosis

Walenta, E., Pessentheiner, A., Pelzmann, H. J., Deutsch, A., Goeritzer, M., Kratky, D., Hackl, H., Oh, D., Prokesch, A. & Bogner-Strauß, J. G., 2013, In : PLoS ONE. 13;8(11):e, p. xx-xx

Research output: Contribution to journalArticleResearchpeer-review

Alterations in the colonic microbiota in response to osmotic diarrhea

Gorkiewicz, G., Thallinger, G., Trajanoski, S., Lackner, S., Stocker, G., Hinterleitner, T., Gülly, C. & Högenauer, C., 2013, In : PLoS ONE. 8, 2, p. e55817-

Research output: Contribution to journalArticleResearchpeer-review

A single switch BCI based on passive and imagined movements: towards restoring communication in minimally conscious patients

Müller-Putz, G., Pokorny, C., Klobassa, D. & Horki, P., 2013, In : International Journal of Neural Systems. 23, 2, 1250037.

Research output: Contribution to journalArticleResearchpeer-review

Bioinformatics tools and challenges in structural analysis of lipidomics MS/MS data

Hartler, J., Tharakan, R., Köfeler, H., Graham, D. & Thallinger, G., 2013, In : Briefings in Bioinformatics. 14, 3, p. 375-390

Research output: Contribution to journalArticleResearchpeer-review

Brain-Computer Interfaces als assistierende Technologie und in der Rehabilitation nach Schlaganfall

Kreilinger, A., Hiebel, H., Ofner, P., Rohm, M., Rupp, R. & Müller-Putz, G., 2013, In : Orthopädie-Technik. 6, p. 18-25

Research output: Contribution to journalArticleResearch

Complete Genome Sequence of the Sugar Beet Endophyte Pseudomonas poae RE*1-1-14: a Disease-Suppressive Bacterium

Müller, H., Zachow, C., Alavi, M., Tilcher, R., Krempl, P., Thallinger, G. & Berg, G., 2013, In : Genome Announcements. 1, 2, p. e00020-13-

Research output: Contribution to journalArticleResearchpeer-review

Complete mitochondrial DNA sequences of the threadfin cichlid (Petrochromis trewavasae) and the blunthead cichlid (Tropheus moorii) and patterns of mitochondrial genome evolution in cichlid fishes.

Fischer, C., Koblmüller, S., Gülly, C., Schlötterer, C., Sturmbauer, C. & Thallinger, G., 2013, In : PLoS ONE. 8, 6, p. e67048-e67048

Research output: Contribution to journalArticleResearchpeer-review

Comprehensive analysis of alterations in the miRNome in response to photodynamic treatment

Bach, D., Fuereder, J., Karbiener, M., Scheideler, M., Ress, A. L., Neureiter, D., Kemmerling, R., Dietze, O., Wiederstein, M., Berr, F., Plaetzer, K., Kiesslich, T. & Pichler, M., 2013, In : Journal of photochemistry and photobiology / B. 120, C, p. 74-81

Research output: Contribution to journalArticleResearchpeer-review

Cortical effects of user training in a motor imagery based brain-computer interface measured by fNIRS and EEG

Kaiser, V., Bauernfeind, G., Kreilinger, A., Kaufmann, T., Kübler, A., Neuper, C. & Müller-Putz, G., 2013, In : NeuroImage. 85, 1, p. 432-444

Research output: Contribution to journalArticleResearchpeer-review

Discussion of “Time-frequency techniques in biomedical signal analysis: A tutorial review of similarities and differences"

Baumgartner, C., Blinowska, K. J., Cichocki, A., Dickhaus, H., Durka, P. J., McClintock, P. V. E., Pfurtscheller, G., Stefanovska, A. & Tong, S., 2013, In : Methods of information in medicine. 52, 4, p. 297-307

Research output: Contribution to journalArticleResearchpeer-review

Early structural and metabolic cardiac remodelling in response to inducible adipose triglyceride lipase ablation.

Kienesberger, P., Pulinilkunnil, T., Nagendran, J., Young, ME., Bogner-Strauß, J. G., Hackl, H., Khadour, R., Heydari, E., Haemmerle, G., Zechner, R., Kershaw, EE. & Dyck, JR., 2013, In : Cardiovascular Research. 1;99(3), p. 442-451

Research output: Contribution to journalArticleResearchpeer-review

Enzymatic synthesis of antibody-human serum albumin conjugate for targeted drug delivery using tyrosinase from Agaricus bisporus

Rollett, A., Thallinger, B., Ohradanova-Repic, A., Machacek, C., Walenta, E., Cavaco-Paulo, A., Birner-Grünberger, R., Bogner-Strauß, J. G., Stockinger, H. & Gübitz, G., 2013, In : RSC Advances . 3, 5, p. 1460-1467

Research output: Contribution to journalArticleResearchpeer-review

High levels of onco-miR-21 contribute to a senescence-like growth arrest in normal human cells and its knock-down increases the replicative life span

Dellago, H., Preschitz-Kammerhofer, B., Schreiner, C., Fortschegger, K., Chang, M., Hackl, M., Monteforte, R., Kühnel, H., Schosserer, M., Gruber, F., Tschachler, E., Scheideler, M., Grillari-Voglauer, R., Grillari, J. & Wieser, M., 2013, In : Aging Cell. 12, 3, p. 446-458

Research output: Contribution to journalArticleResearchpeer-review

Hybrid brain-computer interfaces and hybrid neuroprostheses for restoration of upper limb functions in individuals with high-level spinal cord injury

Rohm, M., Schneiders, M., Müller, C., Kreilinger, A., Kaiser, V., Müller-Putz, G. & Rupp, R., 2013, In : Artificial Intelligence in Medicine. 59, 2, p. 133-142

Research output: Contribution to journalArticleResearchpeer-review

Identification of microRNA-mRNA functional interactions in UVB-induced senescence of human diploid fibroblasts

Greussing, R., Hackl, H., Pornpimol, C., Pauck, A., Monteforte, R., Cavinato, M., Hofer, E., Scheideler, M., Neuhaus, M., Micutkova, L., Mueck, C., Trajanoski, Z., Grillari, J. & Jansen-Dürr, P., 2013, In : BMC Genomics . 14, 224, 19 p.

Research output: Contribution to journalArticleResearchpeer-review

In vitro brown and "brite"/"beige" adipogenesis: human cellular models and molecular aspects

Beranger, G., Karbiener, M., Barquissau, V., Pisani, D., Scheideler, M., Langin, D. & Amri, E-Z., 2013, In : Biochimica et Biophysica Acta. 1831, 5, p. 905–914

Research output: Contribution to journalArticleResearchpeer-review

Long-term evaluation of a 4-class imagery-based brain-computer interface

Friedrich, E., Scherer, R. & Neuper, C., 2013, In : Clinical Neurophysiology. 124, 5, p. 916-927

Research output: Contribution to journalArticleResearchpeer-review

More than cell dust: microparticles isolated from cerebrospinal fluid of brain injured patients are messengers carrying mRNAs, miRNAs and proteins

Patz, S., Trattnig, C., Grünbacher, G., Ebner, B., Gülly, C., Novak, A., Rinner, B., Leitinger, G., Absenger, M., Tomescu, O. A., Thallinger, G., Fasching, U., Wissa, S., Archelos-Garcia, J-J. & Schäfer, U., 2013, In : Journal of neurotrauma. 30, 14, p. 1232-1242

Research output: Contribution to journalArticleResearchpeer-review

N-acetyltransferase 8-like accelerates lipid turnover and increases energy in brown adipocytes

Pessentheiner, A., Pelzmann, H. J., Walenta, E., Schweiger, M., Groschner, L., Graier, W., Kolb, D., Uno, K., Miyazaki, T., Nitta, A., Rieder, D., Prokesch, A. & Bogner-Strauß, J. G., 2013, In : The Journal of Biological Chemistry. 288(50), p. 36040-51

Research output: Contribution to journalArticleResearchpeer-review

Nr4a1 Is Required for Fasting-Induced Down-Regulation of Pparg2 in White Adipose Tissue

Duszka, K., Bogner-Strauß, J. G., Hackl, H., Rieder, D., Neuhold, C., Prokesch, A., Trajanoski, Z. & Krogsdam, A., 2013, In : Molecular endocrinology. 27, 1, p. 135-149

Research output: Contribution to journalArticleResearchpeer-review

On the automated removal of artifacts related to head movement from the EEG

Daly, I., Billinger, M., Scherer, R. & Müller-Putz, G., 2013, In : IEEE transactions on neural systems and rehabilitation engineering. 21, 3, p. 427 - 434

Research output: Contribution to journalArticleResearchpeer-review

On the control of Brain-computer interfaces by users with Cerebral palsy

Daly, I., Billinger, M., Laparra-Hernández, J., Aloise, F., Lloria García, M., Faller, J., Scherer, R. & Müller-Putz, G., 2013, In : Clinical Neurophysiology. 124, 9, p. 1787-1797

Research output: Contribution to journalArticleResearchpeer-review

On the use of games for non-invasive EEG-based Functional Brain Mapping

Scherer, R., Moitzi, G., Daly, I. & Müller-Putz, G., 2013, In : IEEE Transactions on Computational Intelligence and AI in Games. 5, p. 155-163

Research output: Contribution to journalArticleResearchpeer-review

On the use of Non-Invasive Brain-Computer Interface Technology in Neurorehabilitation

Scherer, R., Solis-Escalante, T., Faller, J., Wagner, J., Seeber, M. & Müller-Putz, G., 7 Sep 2013, In : Biomedical Engineering / Biomedizinische Technik.

Research output: Contribution to journalArticleResearchpeer-review

Overexpression of primary microRNA 221/222 in acute myeloid leukemia

Rommer, A., Steinleitner, K., Hackl, H., Schneckenleithner, C., Engelmann, M., Scheideler, M., Vlatkovic, I., Vanura, K., Kralovics, R., Cerny-Reiterer, S., Valent, P., Sill, H. & Wieser, R., 2013, In : BMC Cancer. 13, p. 364

Research output: Contribution to journalArticleResearchpeer-review