Research Output 2002 2019

2019

Enterobacteriaceae dominate the core microbiome and contribute to the resistome of arugula (Eruca sativa Mill.)

Cernava, T., Erlacher, A., Soh, J., Sensen, C. W., Grube, M. & Berg, G., 29 Jan 2019, In : Microbiome. 7, 1, p. 13

Research output: Contribution to journalArticleResearchpeer-review

Microbiota
Enterobacteriaceae
Microbial Drug Resistance
Ecosystem
Aminocoumarins

Hydrogen-driven cofactor regeneration for stereoselective whole-cell C=C bond reduction in Cupriavidus necator

Assil Companioni, L., Schmidt, S., Heidinger, P., Schwab, H. & Kourist, R., 19 Mar 2019, (Accepted/In press) In : ChemSusChem.

Research output: Contribution to journalArticleResearchpeer-review

Hydrogen
regeneration
biotransformation
hydrogen
Recycling

mzTab-M: a data standard for sharing quantitative results in mass spectrometry metabolomics

Hoffmann, N., Rein, J., Sachsenberg, T. T., Hartler, J., Haug, K., Mayer, G., Alka, O., Dayalan, S., Pearce, J. T. M., Rocca-Serra, P., Qi, D., Eisenacher, M., Perez-Riverol, Y., Vizcaíno, J. A., Salek, R. M., Neumann, S. & Jones, A. R., 28 Jan 2019, In : Analytical Chemistry. 91, 5, p. 3302-3310

Research output: Contribution to journalArticleResearchpeer-review

Mass spectrometry
Molecules
Thesauri
XML
Software packages
2018

A concise review of significantly modified serological biomarkers in giant cell arteritis, as detected by different methods

Burja, B., Kuret, T., Sodin-Semrl, S., Lakota, K., Rotar, Ž., Ješe, R., Mrak-Poljšak, K., Žigon, P., Thallinger, G. G., Feichtinger, J., Čučnik, S., Tomšič, M., Praprotnik, S. & Hočevar, A., 1 Feb 2018, In : Autoimmunity Reviews. 17, 2, p. 188-194

Research output: Contribution to journalArticleResearchpeer-review

Giant Cell Arteritis
Biomarkers
Arteries
Systemic Vasculitis
Acute-Phase Proteins

Active HHV-6 Infection of Cerebellar Purkinje Cells in Mood Disorders

Prusty, B. K., Gulve, N., Govind, S., Krueger, G. R. F., Feichtinger, J., Larcombe, L., Aspinall, R., Ablashi, D. V. & Toro, C. T., 2018, In : Frontiers in Microbiology . 9, 12 p., 1955

Research output: Contribution to journalArticleResearchpeer-review

Human Herpesvirus 6
Purkinje Cells
Mood Disorders
Infection
Major Depressive Disorder

Bioinformatic Analysis of FXR related ChIP-seq data

Panzitt, K., Wagner, M. & Thallinger, G., Aug 2018

Research output: Contribution to conferencePosterResearchpeer-review

Bioinformatic Analysis of FXR related ChIP-seq data

Panzitt, K., Wagner, M. & Thallinger, G., 27 Nov 2018

Research output: Contribution to conferencePosterResearchpeer-review

Bioinformatic Analysis of FXR related ChIP-seq data

Panzitt, K., Wagner, M. & Thallinger, G., Sep 2018

Research output: Contribution to conferencePosterResearchpeer-review

Comparison and evaluation of integrative methods for the analysis of multilevel omics data: a study based on simulated and experimental cancer data

Pucher, B. M., Zeleznik, O. A. & Thallinger, G. G., 23 Apr 2018, In : Briefings in bioinformatics.

Research output: Contribution to journalArticleResearchpeer-review

Multilevel Analysis
Microarrays
Factorization
Data mining
Neoplasms

Comparison of tear proteome in allergic rhinoconjunctivitis patients and controls with respect to pollen season

Tomazic, P. V., Liesinger, L., Pucher, B., Thallinger, G. G., Leitner, A., Spoerk, S., Gerstenberger, C., Lang-Loidolt, D. & Birner-Gruenberger, R., Jul 2018, In : Allergy. 73, 7, p. 1541-1543

Research output: Contribution to journalArticleResearchpeer-review

Cytoplasmic location of NR4A1 in aggressive lymphomas is associated with a favourable cancer specific survival

Fechter, K., Feichtinger, J., Prochazka, K., Unterluggauer, J. J., Pansy, K., Steinbauer, E., Pichler, M., Haybaeck, J., Prokesch, A., Greinix, H. T., Beham-Schmid, C., Neumeister, P., Thallinger, G. G. & Deutsch, A. J. A., 28 Sep 2018, In : Scientific reports. 8, 1, 14528

Research output: Contribution to journalArticleResearchpeer-review

Lymphoma
Survival
Nuclear Receptor Subfamily 4, Group A, Member 1
Neoplasms
Germinal Center

Deletion of Adipose Triglyceride Lipase Links Triacylglycerol Accumulation to a More-Aggressive Phenotype in A549 Lung Carcinoma Cells

Tomin, T., Fritz, K., Gindlhuber, J., Waldherr, L., Pucher, B., Thallinger, G. G., Nomura, D. K., Schittmayer, M. & Birner-Gruenberger, R., 6 Apr 2018, In : Journal of proteome research. 17, 4, p. 1415-1425

Research output: Contribution to journalArticleResearchpeer-review

Lipase
Triglycerides
Cells
Carcinoma
Phenotype

Dimension Reduction for the Integrative Analysis of Multilevel Omics Data

Thallinger, G., Pucher, B., Fladischer, N. & Zeleznik, O. A., May 2018, Proceedings of SIAM ALA 2018.

Research output: Chapter in Book/Report/Conference proceedingConference contributionResearchpeer-review

Biological systems
Cells
Proteins

Expression profile of translation initiation factor eIF2B5 in diffuse large B-cell lymphoma and its correlation to clinical outcome

Unterluggauer, J. J., Prochazka, K., Tomazic, P. V., Huber, H. J., Seeboeck, R., Fechter, K., Steinbauer, E., Gruber, V., Feichtinger, J., Pichler, M., Weniger, M. A., Küppers, R., Sill, H., Schicho, R., Neumeister, P., Beham-Schmid, C., Deutsch, A. J. A. & Haybaeck, J., 22 Aug 2018, In : Blood Cancer Journal. 8, 9, 79

Research output: Contribution to journalArticleResearchpeer-review

Open Access

Gene and miRNA expression in giant cell arteritis-a concise systematic review of significantly modified studies

Kuret, T., Burja, B., Feichtinger, J., Thallinger, G. G., Frank-Bertoncelj, M., Lakota, K., Žigon, P., Sodin-Semrl, S., Čučnik, S., Tomšič, M. & Hočevar, A., 1 Aug 2018, In : Clinical Rheumatology.

Research output: Contribution to journalArticleResearchpeer-review

Giant Cell Arteritis
MicroRNAs
Gene Expression
Arteries
Inflammation

Influence of domestic and environmental weathering in the self-cleaning performance and durability of TiO2 photocatalytic coatings

Cedillo-Gonzálaz, E. I., Barbieri, V., Torres-Martínez, L. M., Falcaro, P., Juárez-Ramírez, I., Villanova, L., Montecchi, M. & Pasquali, L., 2018, In : Building and environment. 132, p. 96-103 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Rapid prototyping
Visualization
Feedback
Intuition
Processing

Methanol independent induction in Pichia pastoris by simple derepressed overexpression of single transcription factors

Vogl, T., Sturmberger, L., Fauland, P. C., Hyden, P., Fischer, J. E., Schmid, C., Thallinger, G. G., Geier, M. & Glieder, A., 1 Apr 2018, In : Biotechnology and Bioengineering. 115, 4, p. 1037-1050

Research output: Contribution to journalArticleResearchpeer-review

Transcription factors
Pichia
Methanol
Transcription Factors
Carbon

Methods for Treating and Detecting Johne's Disease in Cattle

Sensen, C. W., Soh, J., Grabuschnig, S., Villanova, L. & Heidinger, P., 16 Apr 2018, Patent No. 62658297

Research output: PatentResearch

Methods for Treating and Detecting Sepsis in Humans

Sensen, C. W., Soh, J., Heidinger, P., Grabuschnig, S. & Villanova, L., 30 Jul 2018, Patent No. 62711970

Research output: PatentResearch

Myristic acid induces proteomic and secretomic changes associated with steatosis, cytoskeleton remodeling, endoplasmic reticulum stress, protein turnover and exosome release in HepG2 cells

Speziali, G., Liesinger, L., Gindlhuber, J., Leopold, C., Pucher, B., Brandi, J., Castagna, A., Tomin, T., Krenn, P., Thallinger, G. G., Olivieri, O., Martinelli, N., Kratky, D., Schittmayer, M., Birner-Gruenberger, R. & Cecconi, D., 15 Jun 2018, In : Journal of proteomics. 181, p. 118-130

Research output: Contribution to journalArticleResearchpeer-review

Exosomes
Endoplasmic Reticulum Stress
Hep G2 Cells
Myristic Acid
Heat-Shock Proteins

Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes

Irisarri, I., Singh, P., Koblmüller, S., Torres-Dowdall, J., Henning, F., Franchini, P., Fischer, C., Lemmon, A. R., Lemmon, E. M., Thallinger, G. G., Sturmbauer, C. & Meyer, A., 8 Aug 2018, In : Nature Communications. 9, 1, 3159

Research output: Contribution to journalArticleResearchpeer-review

Cichlids
Tanzania
fishes
loci
Lakes

Plasticity of a holobiont: desiccation induces fasting-like metabolism within the lichen microbiota

Cernava, T., Aschenbrenner, I., Soh, J., Sensen, C. W., Grube, M. & Berg, G., 11 Oct 2018, In : The ISME journal. 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access

The mitochondrial genome of the oribatid mite Paraleius leontonychus: new insights into tRNA evolution and phylogenetic relationships in acariform mites

Schäffer, S., Koblmüller, S., Klymiuk, I. & Thallinger, G. G., 15 May 2018, In : Scientific reports. 8, 1, 7558

Research output: Contribution to journalArticleResearchpeer-review

Mitochondrial Genome
Mites
Transfer RNA
RNA, Transfer, Gly
RNA, Transfer, Tyr

Translation initiation factors are over-expressed in aggressive lymphomas and influence their clinical course

Unterluggauer, J. J., Prochazka, K., Tomazic, P. V., Huber, H. J., Seeboeck, R., Fechter, K., Steinbauer, E., Gruber, V., Feichtinger, J., Pichler, M., Weniger, M. A., Kuppers, R., Sill, H., Schicho, R., Neumeister, P., Beham-Schmid, C., Deutsch, A. & Haybaeck, J., 2018, In : Oncology Research and Treatment. 41, p. 164 1 p.

Research output: Contribution to journalAbstractResearch

Utility of serological biomarkers for giant cell arteritis in a large cohort of treatment-naïve patients

Burja, B., Feichtinger, J., Lakota, K., Thallinger, G. G., Sodin-Semrl, S., Kuret, T., Rotar, Ž., Ješe, R., Žigon, P., Čučnik, S., Mali, P., Praprotnik, S., Tomšič, M. & Hočevar, A., 24 Aug 2018, In : Clinical Rheumatology.

Research output: Contribution to journalArticleResearchpeer-review

Giant Cell Arteritis
Biomarkers
Blood Donors
Matrix Metalloproteinases
Therapeutics
2017

Circulating Nucleic Acids as Early Diagnostic Markers

Heidinger, P., Bachler, T., Soh, J., Villanova, L., Grabuschnig, S. & Sensen, C. W., 2017

Research output: Contribution to conferencePosterResearch

Circulating Nucleic Acids as Early Diagnostic Markers for Sepsis

Ullrich, E., Heidinger, P., Sensen, C. W. & Krause, R., 2017

Research output: Contribution to conferencePosterResearch

Comprehensive Analysis of Genomic Data for 16 CHO Cell Lines to Investigate the (In)stability of the CHO Genome

Feichtinger, J., Fischer, C., Hernández López, I., Borth, N. & Thallinger, G., 2017

Research output: Contribution to conferencePosterResearch

Comprehensive Analysis of Genomic Data for 16 CHO Cell Lines to Investigate the (In)stability of the CHO Genome

Feichtinger, J., Fischer, C., Hernandez, I., Dhiman, H., Borth, N. & Thallinger, G., 2017

Research output: Contribution to conferencePosterResearch

Critical Issues in Mycobiota Analysis

Halwachs, B., Madhusudhan, N., Krause, R., Nilsson, R. H., Moissl-Eichinger, C., Högenauer, C., Thallinger, G. G. & Gorkiewicz, G., 2017, In : Frontiers in Microbiology . 8, 180

Research output: Contribution to journalArticleResearchpeer-review

Microbiota
Computational Biology
Fungal Genes
rRNA Genes
Computer Simulation

Deciphering lipid structures based on platform-independent decision rules

Hartler, J., Triebl, A., Ziegl, A., Trötzmüller, M., Rechberger, G. N., Zeleznik, O. A., Zierler, K. A., Torta, F., Cazenave-Gassiot, A., Wenk, M. R., Fauland, A., Wheelock, C. E., Armando, A. M., Quehenberger, O., Zhang, Q., Wakelam, M. JO., Haemmerle, G., Spener, F., Köfeler, H. C. & Thallinger, G. G., 18 Oct 2017

Research output: Contribution to conferencePosterResearch

Lipids
Mass spectrometers
Complex Mixtures
Fatty Acids
Ions

Deciphering lipid structures based on platform-independent decision rules

Hartler, J., Triebl, A., Ziegl, A., Trötzmüller, M., Rechberger, G. N., Zeleznik, O. A., Zierler, K. A., Torta, F., Cazenave-Gassiot, A., Wenk, M. R., Fauland, A., Wheelock, C. E., Armando, A. M., Quehenberger, O., Zhang, Q., Wakelam, M. JO., Haemmerle, G., Spener, F., Köfeler, H. C. & Thallinger, G. G., Nov 2017

Research output: Contribution to conferencePosterResearchpeer-review

Lipids
Mass spectrometers
Complex Mixtures
Fatty Acids
Ions

Deciphering lipid structures based on platform-independent decision rules

Hartler, J., Triebl, A., Ziegl, A., Trötzmüller, M., Rechberger, G. N., Zeleznik, O. A., Zierler, K. A., Torta, F., Cazenave-Gassiot, A., Wenk, M. R., Fauland, A., Wheelock, C. E., Armando, A. M., Quehenberger, O., Zhang, Q., Wakelam, M. JO., Haemmerle, G., Spener, F., Köfeler, H. C. & Thallinger, G. G., 13 Sep 2017

Research output: Contribution to conferencePosterResearchpeer-review

Lipids
Mass spectrometers
Complex Mixtures
Fatty Acids
Ions

Deciphering lipid structures based on platform-independent decision rules

Hartler, J., Triebl, A., Ziegl, A., Trötzmüller, M., Rechberger, G. N., Zeleznik, O. A., Zierler, K. A., Torta, F., Cazenave-Gassiot, A., Wenk, M. R., Fauland, A., Wheelock, C. E., Armando, A. M., Quehenberger, O., Zhang, Q., Wakelam, M. JO., Haemmerle, G., Spener, F., Köfeler, H. C. & Thallinger, G. G., 1 Dec 2017, In : Nature methods. 14, 12, p. 1171-1174

Research output: Contribution to journalArticleResearchpeer-review

Lipids
Mass spectrometry
Software reliability
Tandem Mass Spectrometry
Chromatography

Determination of the Isotopic Enrichment of 13C- and 2H-Labeled Tracers of Glucose Using High-Resolution Mass Spectrometry: Application to Dual- and Triple-Tracer Studies

Trötzmüller, M., Triebl, A., Ajsic, A., Hartler, J., Köfeler, H. & Regittnig, W., 21 Nov 2017, In : Analytical Chemistry. 89, 22, p. 12252-12260 9 p.

Research output: Contribution to journalArticleResearchpeer-review

Mass spectrometry
Glucose
Ions
Blood
Plasmas

Editorial Special Issue on the Occasion of Prof. Dr. Alf Pühlers 75th birthday.

Marques Alves, P., Becker, A., Blöcker, H., Chan, R. L., Chen, G. G-Q., Fussenegger, M., Kondo, A., Kourist, R., Schwab, H., Sensen, C. W., Sensen, M., Seo, J-H. & Srienc, F., 10 Sep 2017, In : Journal of Biotechnology. p. 1 1 p., doi: 10.1016/j.jbiotec.2017.07.013

Research output: Contribution to journalEditorialResearch

Erratum: Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily

Lanfranchi, E., Pavkov-Keller, T., Koehler, E-M., Diepold, M., Steiner, K., Darnhofer, B., Hartler, J., Bergh, T. V. D., Joosten, H-J., Gruber-Khadjawi, M., Thallinger, G. G., Birner-Gruenberger, R., Gruber, K., Winkler, M. & Glieder, A., 26 May 2017, In : Scientific reports. 7, 46834

Research output: Contribution to journalArticleResearchpeer-review

mandelonitrile lyase
Enzymes

Four distinct types of E.C. 1.2.1.30 enzymes can catalyze the reduction of carboxylic acids to aldehydes

Stolterfoht, H., Schwendenwein, D., Sensen, C. W., Rudroff, F. & Winkler, M., 2017, In : Journal of Biotechnology. 257, p. 222-232

Research output: Contribution to journalArticleResearchpeer-review

Lipidomics: Prospects from a technological perspective

Triebl, A., Hartler, J., Trötzmüller, M. & Köfeler, H. C., Aug 2017, In : Biochimica et Biophysica Acta / Molecular and Cell Biology of Lipids. 1862, 8, p. 740 746 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
Technology
Benchmarking
Workflow
Genomics
Proteomics

Lipidomics by ultrahigh performance liquid chromatography-high resolution mass spectrometry and its application to complex biological samples

Triebl, A., Trötzmüller, M., Hartler, J., Stojakovic, T. & Köfeler, H. C., 15 May 2017, In : Journal of chromatography / B. 1053, p. 72-80 9 p.

Research output: Contribution to journalArticleResearchpeer-review

High performance liquid chromatography
Mass spectrometry
Mass Spectrometry
High Pressure Liquid Chromatography
Reverse-Phase Chromatography

MetExtract II: A Software Suite for Stable Isotope-Assisted Untargeted Metabolomics

Bueschl, C., Kluger, B., Neumann, N. K. N., Doppler, M., Maschietto, V., Thallinger, G. G., Meng-Reiterer, J., Krska, R. & Schuhmacher, R., 5 Sep 2017, In : Analytical Chemistry. 89, 17, p. 9518-9526

Research output: Contribution to journalArticleResearchpeer-review

Metabolites
Isotopes
Mass spectrometry
Liquid chromatography
Labeling

Methods and Systems for Detecting Bovine Spongiform Encephalopathy in Cattle

Balkema-Buschmann, A., Church, R. B., Gordon, P. M. K., Groschup, M. H., Sensen, C. W., Sensen, M. & Kannanayakal, T., 15 Sep 2017, Patent No. 62559476

Research output: PatentResearch

Mitochondrial fragmentation in fatty liver

Gindlhuber, J., Darnhofer, B., Pucher, B., Tomin, T., Thallinger, G. & Birner-Gruenberger, R., 6 Sep 2017

Research output: Contribution to conferencePosterResearch

NR4A3 Suppresses Lymphomagenesis through Induction of Proapoptotic Genes

Deutsch, A. J. A., Rinner, B., Pichler, M., Prochazka, K., Pansy, K., Bischof, M., Fechter, K., Hatzl, S., Feichtinger, J., Wenzl, K., Frisch, M-T., Stiegelbauer, V., Prokesch, A., Krogsdam, A., Sill, H., Thallinger, G. G., Greinix, H. T., Wang, C., Beham-Schmid, C. & Neumeister, P., 1 May 2017, In : Cancer Research. 77, 9, p. 2375-2386

Research output: Contribution to journalArticleResearchpeer-review

Lymphoma
Genes
Neoplasms
Nuclear Receptor Subfamily 4, Group A, Member 1
Puma

Proposal for a common nomenclature for fragment ions in mass spectra of lipids

Pauling, J. K., Hermansson, M., Hartler, J., Christiansen, K., Gallego, S. F., Peng, B., Ahrends, R. & Ejsing, C. S., Nov 2017, In : PLoS ONE. 12, 11, p. e0188394 21 p.

Research output: Contribution to journalArticleResearchpeer-review

Terminology
Ions
ions
Lipids
lipids

Proteome-wide impact of oleic and palmitic acid induced steatosis in human liver cells

Liesinger, L., Gindlhuber, J., Pucher, B., Thallinger, G. & Birner-Gruenberger, R., 6 Sep 2017

Research output: Contribution to conferencePosterResearch

The Human Gastric Microbiome Is Predicated upon Infection with Helicobacter pylori

Klymiuk, I., Bilgilier, C., Stadlmann, A., Thannesberger, J., Kastner, M-T., Högenauer, C., Püspök, A., Biowski-Frotz, S., Schrutka-Kölbl, C., Thallinger, G. G. & Steininger, C., 14 Dec 2017, In : Frontiers in Microbiology . 8, 2508

Research output: Contribution to journalArticleResearchpeer-review

Microbiota
Helicobacter pylori
Stomach
Infection
Helicobacter Infections

The role of protein-phosphorylation in lipolysis

Krenn, P., Liesinger, L., Pucher, B., Schittmayer, M., Thallinger, G., Cox, J. & Birner-Gruenberger, R., 6 Sep 2017

Research output: Contribution to conferencePosterResearch