Intertwining phylogenetic trees and networks

Klaus Schliep, Alastair J. Potts*, David A. Morrison, Guido W. Grimm

*Korrespondierende/r Autor/in für diese Arbeit

Publikation: Beitrag in einer FachzeitschriftArtikel

Abstract

The fields of phylogenetic tree and network inference have dramatically advanced in the past decade, but independently with few attempts to bridge them. Here we provide a framework, implemented in the phangorn library in R, to transfer information between trees and networks. This includes: (i) identifying and labelling equivalent tree branches and network edges, (ii) transferring tree branch support to network edges, and (iii) mapping bipartition support from a sample of trees (e.g. from bootstrapping or Bayesian inference) onto network edges. The ability to readily combine tree and network information should lead to more comprehensive evolutionary comparisons and inferences.

Originalspracheenglisch
Seiten (von - bis)1212-1220
Seitenumfang9
FachzeitschriftMethods in Ecology and Evolution
Jahrgang8
Ausgabenummer10
DOIs
PublikationsstatusVeröffentlicht - 1 Okt 2017
Extern publiziertJa

ASJC Scopus subject areas

  • !!Ecology, Evolution, Behavior and Systematics
  • !!Ecological Modelling

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