Jan Egger

Dr.rer.physiol. Priv.-Doz. Dr.rer.nat.

20132022
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Forschungsoutput 2014 2019

2019

A Client/Server Based Online Environment for Manual Segmentation of Medical Images

Wild, D., Weber, M. & Egger, J., 2019, The 23rd Central European Seminar on Computer Graphics (CESCG). S. 1-8

Publikation: Beitrag in Buch/Bericht/KonferenzbandBeitrag in einem KonferenzbandForschungBegutachtung

Servers
Medical image processing
Web browsers
Medical imaging
Fault tolerance

A Client/Server based Online Environment for the Calculation of Medical Segmentation Scores

Weber, M., Wild, D., Wallner, J. & Egger, J., 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). S. 3463-3467 5 S.

Publikation: Beitrag in Buch/Bericht/KonferenzbandBeitrag in einem KonferenzbandForschungBegutachtung

Image segmentation
Servers
Medical imaging
Radiology
Tumors

A Marker-Less Registration Approach for Mixed Reality–Aided Maxillofacial Surgery: a Pilot Evaluation

Pepe, A., Trotta, G. F., Mohr-Ziak, P., Gsaxner, C., Wallner, J., Bevilacqua, V. & Egger, J., 4 Sep 2019, in : Journal of digital imaging. 32, 6, S. 1008-1018 11 S.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Oral Surgery
Surgery
Tissue
Helmet mounted displays
Operating rooms

A Review on Multiplatform Evaluations of Semi-Automatic Open-Source Based Image Segmentation for Cranio-Maxillofacial Surgery

Wallner, J., Schwaiger, M., Hochegger, K. M., Gsaxner, C., Zemann, W. & Egger, J., 2019, in : Computer methods and programs in biomedicine. 182, 23 S., 105102.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Oral Surgery
Image segmentation
Software packages
Surgery
Licensure

Automated Computer-aided Design of Cranial Implants Using a Deep Volumetric Convolutional Denoising Autoencoder

Morais, A., Egger, J. & Alves, V., 2019, New Knowledge in Information Systems and Technologies: WorldCIST'19 2019. Rocha, Á., Adeli, H., Reis, L. & Costanzo, S. (Hrsg.). Cham: Springer, Band 1. S. 151-160 (Advances in Intelligent Systems and Computing; Band 932).

Publikation: Beitrag in Buch/Bericht/KonferenzbandBeitrag in einem KonferenzbandForschungBegutachtung

Computer aided design
Brain
Experiments
Defects
Processing

Computed tomography data collection of the complete human mandible and valid clinical ground truth models

Wallner, J., Mischak, I. & Egger, J., 2019, in : Scientific Data . 6, 14 S., 190003.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Open Access
Computed Tomography
Tomography
Computerized tomography
Valid
Segmentation

Depth-Awareness in a System for Mixed-Reality Aided Surgical Procedures

Sylos Labini, M., Gsaxner, C., Pepe, A., Wallner, J., Egger, J. & Bevilacqua, V., 2019, Intelligent Computing Methodologies - 15th International Conference, ICIC 2019, Proceedings. Huang, Z-K., Hussain, A. & Huang, D-S. (Hrsg.). Springer Verlag Heidelberg, S. 716-726 11 S. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Band 11645 LNAI).

Publikation: Beitrag in Buch/Bericht/KonferenzbandBeitrag in einem KonferenzbandForschungBegutachtung

Mixed Reality
Surgery
Operating rooms
Navigation
Sensing

Exploit fully automatic low-level segmented PET data for training high-level deep learning algorithms for the corresponding CT data

Gsaxner, C., Roth, P. M., Egger, J. & Wallner, J., 2019, in : PLoS ONE. S. e0212550

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

neural networks
Learning algorithms
Urinary Bladder
Positron emission tomography
learning

Free thoracodorsal, perforator-scapular flap based on the angular artery (TDAP-Scap-aa): Clinical experiences and description of a novel technique for single flap reconstruction of extensive oromandibular defects

Pau, M., Wallner, J., Feichtinger, M., Schwaiger, M., Egger, J., Cambiaso-Daniel, J., Winter, R., Jakse, N. & Zemann, W., 2019, in : Journal of Cranio-Maxillofacial Surgery. 47, 10, S. 1617-1625

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Perforator Flap
Arteries
Bone and Bones
Tissue Donors
Skin

Learning from the Truth: Fully Automatic Ground Truth Generation for Training of Medical Deep Learning Networks

Gsaxner, C., Roth, P. M., Wallner, J. & Egger, J., 2019, Proceedings of the Joint ARW & OAGM Workshop 2019. Pichler, A., Roth, P. M., Slabatnig, R., Stübl, G. & Vincze, M. (Hrsg.). Graz: Verlag der Technischen Universität Graz, S. 173-174

Publikation: Beitrag in Buch/Bericht/KonferenzbandBeitrag in einem KonferenzbandForschungBegutachtung

Open Access
Image analysis
Positron emission tomography
Tomography
Neural networks
Supervised learning

Markerless Image-to-Face Registration for Untethered Augmented Reality in Head and Neck Surgery

Gsaxner, C., Pepe, A., Schmalstieg, D., Egger, J. & Wallner, J., 2019, International Conference on Medical Image Computing and Computer-Assisted Intervention. S. 236-244

Publikation: Beitrag in Buch/Bericht/KonferenzbandBeitrag in einem KonferenzbandForschungBegutachtung

Neck
Head
Physicians
Head and Neck Neoplasms
Tomography

Pattern Recognition and Mixed Reality for Computer-Aided Maxillofacial Surgery and Oncological Assessment

Pepe, A., Trotta, G. F., Gsaxner, C., Schmalstieg, D., Wallner, J., Egger, J. & Bevilacqua, V., 2019, BMEiCON 2018 - 11th Biomedical Engineering International Conference. 8609921

Publikation: Beitrag in Buch/Bericht/KonferenzbandBeitrag in einem KonferenzbandForschungBegutachtung

surgery
pattern recognition
Surgery
Pattern recognition
earphones

PET-Train: Automatic Ground Truth Generation from PET Acquisitions for Urinary Bladder Segmentation in CT Images using Deep Learning

Gsaxner, C., Pfarrkirchner, B., Lindner, L., Pepe, A., Roth, P. M., Wallner, J. & Egger, J., 2019.

Publikation: KonferenzbeitragPaperForschungBegutachtung

Positron emission tomography
ground truth
bladder
learning
Tomography

Using Synthetic Training Data for Deep Learning-Based GBM Segmentation

Lindner, L., Narnhofer, D., Weber, M., Gsaxner, C., Egger, J. & Kolodziej, M., 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). Institute of Electrical and Electronics Engineers, S. 6724-6729 6 S.

Publikation: Beitrag in Buch/Bericht/KonferenzbandBeitrag in einem KonferenzbandForschungBegutachtung

Medical image processing
Neural networks
Magnetic resonance
Image segmentation
Tumors
2018

Chemotherapeutic agents eligible for prior dosing in pancreatic cancer patients requiring hemodialysis: A systematic review

Hann, A., Nosalski, E., Hermann, P. C., Egger, J., Seufferlein, T. & Keller, F., 1 Aug 2018, in : Clinical Nephrology. 90, 2, S. 125-141 17 S.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Pancreatic Neoplasms
Renal Dialysis
oxaliplatin
irinotecan
gemcitabine

Clinical evaluation of semi-automatic open-source algorithmic software segmentation of the mandibular bone: Practical feasibility and assessment of a new course of action

Wallner, J., Hochegger, K., Chen, X., Mischak, I., Reinbacher, K., Pau, M., Zrnc, T., Schwenzer-Zimmerer, K., Zemann, W., Schmalstieg, D. & Egger, J., 2018, in : PLoS ONE. 13, 5

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Open Access
Bone
Software
Visualization
bones
Personnel

Exploit 18F-FDG enhanced urinary bladder in PET data for deep learning ground truth generation in CT scans

Gsaxner, C., Pfarrkirchner, B., Lindner, L., Jakse, N., Wallner, J., Schmalstieg, D. & Egger, J., 12 Mär 2018, Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE Press, SPIE - The International Society for Optical Engineering

Publikation: Beitrag in Buch/Bericht/KonferenzbandBeitrag in einem KonferenzbandForschungBegutachtung

Fully Convolutional Mandible Segmentation on a valid Ground-Truth Dataset

Egger, J., Pfarrkirchner, B., Gsaxner, C., Lindner, L., Schmalstieg, D. & Wallner, J., 2018, Proceedings IEEE Engineering in Medicine and Biology Conference (EMBC).

Publikation: Beitrag in Buch/Bericht/KonferenzbandBeitrag in einem KonferenzbandForschungBegutachtung

Lower jawbone data generation for deep learning tools under MeVisLab

Pfarrkirchner, B., Gsaxner, C., Lindner, L., Jakse, N., Wallner, J., Schmalstieg, D. & Egger, J., 2018.

Publikation: KonferenzbeitragPaperForschungBegutachtung

Multi-threaded integration of HTC-Vive and MeVisLab

Gunacker, S., Gall, M., Schmalstieg, D. & Egger, J., 2018.

Publikation: KonferenzbeitragPaperForschungBegutachtung

TuMore: generation of synthetic brain tumor MRI data for deep learning based segmentation approaches

Lindner, L., Pfarrkirchner, B., Gsaxner, C., Schmalstieg, D. & Egger, J., 2018.

Publikation: KonferenzbeitragPaperForschungBegutachtung

Open Access
2017

Algorithm guided outlining of 105 pancreatic cancer liver metastases in Ultrasound

Hann, A., Bettac, L., Haenle, M. M., Graeter, T., Berger, A. W., Dreyhaupt, J., Schmalstieg, D., Zoller, W. G. & Egger, J., 6 Okt 2017, in : Scientific reports. 7, 1, S. 12779

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Liver Neoplasms
Pancreatic Neoplasms
Neoplasm Metastasis
Liver

Algorithmic evaluation of lower jawbone segmentations

Egger, J., Hochegger, K., Gall, M., Chen, X., Reinbacher, K., Schwenzer-Zimmerer, K., Schmalstieg, D. & Wallner, J., 1 Feb 2017, Proc. SPIE Medical Imaging. Orlando, FL, USA

Publikation: Beitrag in Buch/Bericht/KonferenzbandBeitrag in einem KonferenzbandForschungBegutachtung

Augmented Reality (AR)-guided intraoperative Navigation

Egger, J., 2017.

Publikation: KonferenzbeitragPosterForschung

Automatic urinary bladder segmentation in CT images using deep learning

Gsaxner, C., 2017

Publikation: StudienabschlussarbeitMasterarbeitForschung

A VR-based surgical simulation system using patient- specific physical computing model

Egger, J., 2017.

Publikation: KonferenzbeitragPosterForschungBegutachtung

Computer-aided implant design for the restoration of cranial defects

Chen, X., Xu, L., Li, X. & Egger, J., 23 Jun 2017, in : Scientific reports. 7, 1, S. 4199

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Computer-Aided Design
Software
Efficiency

Computer-aided position planning of miniplates to treat facial bone defects

Egger, J., Wallner, J., Gall, M., Chen, X., Schwenzer-Zimmerer, K., Reinbacher, K. & Schmalstieg, D., 2017, in : PLoS ONE. 12, 8, S. e0182839

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Facial Bones
Bone
surgeons
planning
bones

Feasibility of alternating induction and maintenance chemotherapy in pancreatic cancer

Hann, A., Bohle, W., Egger, J. & Zoller, W., 31 Jan 2017, in : Scientific reports. 7, 7 S., 41549.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Maintenance Chemotherapy
Induction Chemotherapy
Pancreatic Neoplasms
Adenocarcinoma
Therapeutics

HTC Vive MeVisLab integration via OpenVR for medical applications

Egger, J., Gall, M., Wallner, J., Boechat, P., Hann, A., Li, X., Chen, X. & Schmalstieg, D., 2017, in : PLoS ONE. 12, 3, S. e0173972

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Medical applications
Virtual reality
Libraries
medical equipment
Equipment and Supplies

In-depth Assessment of an Interactive Graph-based Approach for the Segmentation for Pancreatic Metastasis in Ultrasound Acquisitions of the Liver with two Specialists in Internal Medicine

Egger, J., Chen, X., Bettac, L., Haenle, M. M., Graeter, T., Zoller, W., Schmalstieg, D. & Hann, A., 2017.

Publikation: KonferenzbeitragPaperForschungBegutachtung

Integration of the HTC Vive into the Medical Platform MeVisLab

Egger, J., Gall, M., Hann, A., Li, X., Chen, X., Schmalstieg, D., Boechat de Almeida Germano, P. & Wallner, J., 1 Feb 2017, Proc. SPIE Medical Imaging. Orlando, FL, USA

Publikation: Beitrag in Buch/Bericht/KonferenzbandBeitrag in einem KonferenzbandForschungBegutachtung

Integration of the HTC Vive into the Medical Platform MeVisLab

Egger, J., 2017.

Publikation: KonferenzbeitragPosterForschungBegutachtung

Interactive algorithm for the measurement of pancreatic cancer liver metastases in ultrasound

Egger, J., 2017.

Publikation: KonferenzbeitragPosterForschungBegutachtung

Interactive Outlining of Pancreatic Cancer Liver Metastases in Ultrasound Images

Egger, J., Schmalstieg, D., Chen, X., Zoller, W. G. & Hann, A., 18 Apr 2017, in : Scientific reports. 7, 1, S. 892

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Liver Neoplasms
Pancreatic Neoplasms
Neoplasm Metastasis
Liver
Costs and Cost Analysis

Interactive Planning of Miniplates

Gall, M., Reinbacher, K., Stanzel, J., Chen, X., Schwenzer-Zimmerer, K., Wallner, J., Schmalstieg, D. & Egger, J., 1 Feb 2017, Proc. SPIE Medical Imaging. Orlando, FL, USA

Publikation: Beitrag in Buch/Bericht/KonferenzbandBeitrag in einem KonferenzbandForschungBegutachtung

Interactive Planning of Miniplates

Egger, J., 2017.

Publikation: KonferenzbeitragPosterForschungBegutachtung

Interactive reconstructions of cranial 3D implants under MeVisLab as an alternative to commercial planning software

Egger, J., Gall, M., Tax, A., Ücal, M., Zefferer, U., Li, X., von Campe, G., Schäfer, U., Schmalstieg, D. & Chen, X., 2017, in : PLoS ONE. 12, 3, S. e0172694

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

prototypes
computer-aided design
Software
planning
Workflow

Interaktive Planung von Gesichtsimplantaten

Gall, M., Reinbacher, K., Schwenzer-Zimmerer, K., Schmalstieg, D., Egger, J. & Wallner, J., 1 Mär 2017, Proc. Bildverarbeitung fuer die Medizin (BVM). Heidelberg, Germany

Publikation: Beitrag in Buch/Bericht/KonferenzbandBeitrag in einem KonferenzbandForschungBegutachtung

Interaktive Planung von Gesichtsimplantaten

Egger, J., 2017.

Publikation: KonferenzbeitragPosterForschungBegutachtung

Vertebral body segmentation with GrowCut: Initial experience, workflow and practical application

Egger, J., Nimsky, C. & Chen, X., 2017, in : SAGE open medicine. 5, S. 2050312117740984

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Workflow
Spine
Spinal Diseases
Osteoporotic Fractures
Magnetic Resonance Imaging
2016

AR (augmented reality)-Paradigmenwechsel im Therapiedesign

Reinbacher, K., Wallner, J., Egger, J., Voglreiter, P., Pau, M., Zrnc, T., Feichtinger, M. & Schwenzer-Zimmerer, K., 2016.

Publikation: Konferenzbeitrag(Altdaten) Vortrag oder PräsentationForschung

A semi-automatic computer-aided method for surgical template design

Chen, X., Xu, L., Yang, Y. & Egger, J., 2016, in : Scientific reports. S. 1-18

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Open Access
Datei

Clinical Evaluation of Mandibular Bone Segmentation

Egger, J., Hochegger, K., Gall, M., Reinbacher, K., Schwenzer-Zimmerer, K., Wallner, J. & Schmalstieg, D., 1 Aug 2016, Proc. IEEE Engineering in Medicine and Biology Society (EMBC'16), Posters. Orlando, FL, USA: IEEE Computer Society

Publikation: Beitrag in Buch/Bericht/KonferenzbandBeitrag in einem KonferenzbandForschungBegutachtung

Computer-Aided Planning and Reconstruction of Cranial 3D Implants

Gall, M., Li, X., Chen, X., Schmalstieg, D. & Egger, J., 1 Aug 2016, Proc. IEEE Engineering in Medicine and Biology Society (EMBC'16). Orlando, FL, USA

Publikation: Beitrag in Buch/Bericht/KonferenzbandBeitrag in einem KonferenzbandForschungBegutachtung

Computer-Aided Planning of Cranial 3D Implants

Gall, M., Chen, X., Schmalstieg, D. & Egger, J., 1 Jun 2016, in : International Journal of Computer Assisted Radiology and Surgery. 11, Suppl 1, S. 187

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Computer-aided Reconstruction of Facial Defects

Gall, M., Wallner, J., Schwenzer-Zimmerer, K., Schmalstieg, D., Reinbacher, K. & Egger, J., 1 Aug 2016.

Publikation: KonferenzbeitragPosterForschungBegutachtung

Development of a computer-aided design software for dental splint in orthognathic surgery

Chen, X., Li, X., Xu, L., Sun, Y., Politis, C. & Egger, J., 14 Dez 2016, in : Scientific reports. 6, S. 38867

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Orthognathic Surgery
Computer-Aided Design
Splints
Tooth
Software