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Forschungsoutput 2002 2019

2019

A Comprehensive FXR Signaling Atlas Derived from Pooled ChIP-seq Data

Jungwirth, E., Panzitt, K., Marschall, H-U., Wagner, M. & Thallinger, G. G., 2019, in : Studies in health technology and informatics. 260, S. 105-112 8 S.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Open Access
Atlases
Transcription factors
Binding sites
Gene expression
Liver

Cellular Immune Response Involving Multinucleated Giant Hemocytes with Two-Step Genome Amplification in the Drosophilid Zaprionus indianus

Cinege, G., Lerner, Z., Magyar, L. B., Soós, B., Tóth, R., Kristó, I., Vilmos, P., Juhász, G., Kovács, A. L., Hegedűs, Z., Sensen, C. W., Kurucz, É. & Andó, I., 25 Sep 2019, in : Journal of Innate Immunity. 16 S.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Open Access
Hemocytes
Cellular Immunity
Giant Cells
Genome
Drosophilidae

Comparison and evaluation of integrative methods for the analysis of multilevel omics data: a study based on simulated and experimental cancer data

Pucher, B. M., Zeleznik, O. A. & Thallinger, G. G., 25 Mär 2019, in : Briefings in Bioinformatics. 20, 2, S. 671-681

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Multilevel Analysis
Microarrays
Factorization
Data mining
Neoplasms

Enterobacteriaceae dominate the core microbiome and contribute to the resistome of arugula (Eruca sativa Mill.)

Cernava, T., Erlacher, A., Soh, J., Sensen, C. W., Grube, M. & Berg, G., 29 Jan 2019, in : Microbiome. 7, 1, S. 13 13.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Microbiota
Enterobacteriaceae
Microbial Drug Resistance
Ecosystem
Aminocoumarins

Gene and miRNA expression in giant cell arteritis-a concise systematic review of significantly modified studies

Kuret, T., Burja, B., Feichtinger, J., Thallinger, G. G., Frank-Bertoncelj, M., Lakota, K., Žigon, P., Sodin-Semrl, S., Čučnik, S., Tomšič, M. & Hočevar, A., Feb 2019, in : Clinical Rheumatology. 38, 2, S. 307-316

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Giant Cell Arteritis
MicroRNAs
Gene Expression
Arteries
Inflammation

Hydrogen-driven cofactor regeneration for stereoselective whole-cell C=C bond reduction in Cupriavidus necator

Assil Companioni, L., Schmidt, S., Heidinger, P., Schwab, H. & Kourist, R., 19 Mär 2019, in : ChemSusChem. 12, 11, S. 2361-2365 5 S.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

biotransformation
Hydrogen
regeneration
hydrogen
Hydrogenase

jmzTab-M: A Reference Parser, Writer and Validator for the Proteomics Standards Initiative mzTab 2.0 Metabolomics Standard

Hoffmann, N., Hartler, J. & Ahrends, R., 17 Sep 2019, in : Analytical Chemistry. 4 S.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Graphical user interfaces
Metabolites
Metadata
Application programming interfaces (API)
Telecommunication links

mzTab-M: a data standard for sharing quantitative results in mass spectrometry metabolomics

Hoffmann, N., Rein, J., Sachsenberg, T. T., Hartler, J., Haug, K., Mayer, G., Alka, O., Dayalan, S., Pearce, J. T. M., Rocca-Serra, P., Qi, D., Eisenacher, M., Perez-Riverol, Y., Vizcaíno, J. A., Salek, R. M., Neumann, S. & Jones, A. R., 28 Jan 2019, in : Analytical Chemistry. 91, 5, S. 3302-3310 9 S.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Mass spectrometry
Molecules
Thesauri
XML
Software packages

The CXCR4-CXCL12-Axis Is of Prognostic Relevance in DLBCL and Its Antagonists Exert Pro-Apoptotic Effects In Vitro

Pansy, K., Feichtinger, J., Ehall, B., Uhl, B., Sedej, M., Roula, D., Pursche, B., Wolf, A., Zoidl, M., Steinbauer, E., Gruber, V., Greinix, H. T., Prochazka, K. T., Thallinger, G. G., Heinemann, A., Beham-Schmid, C., Neumeister, P., Wrodnigg, T. M., Fechter, K. & Deutsch, A. J., 24 Sep 2019, in : International Journal of Molecular Sciences . 20, 19, 4740.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Open Access
Lymphoma, Large B-Cell, Diffuse
Lymphoma
Cells
bone marrow
Bone

Utility of serological biomarkers for giant cell arteritis in a large cohort of treatment-naïve patients

Burja, B., Feichtinger, J., Lakota, K., Thallinger, G. G., Sodin-Semrl, S., Kuret, T., Rotar, Ž., Ješe, R., Žigon, P., Čučnik, S., Mali, P., Praprotnik, S., Tomšič, M. & Hočevar, A., Feb 2019, in : Clinical Rheumatology. 38, 2, S. 317-329

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Giant Cell Arteritis
Biomarkers
Blood Donors
Matrix Metalloproteinases
Therapeutics
2018

A concise review of significantly modified serological biomarkers in giant cell arteritis, as detected by different methods

Burja, B., Kuret, T., Sodin-Semrl, S., Lakota, K., Rotar, Ž., Ješe, R., Mrak-Poljšak, K., Žigon, P., Thallinger, G. G., Feichtinger, J., Čučnik, S., Tomšič, M., Praprotnik, S. & Hočevar, A., 1 Feb 2018, in : Autoimmunity Reviews. 17, 2, S. 188-194

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Giant Cell Arteritis
Biomarkers
Arteries
Systemic Vasculitis
Acute-Phase Proteins

Active HHV-6 Infection of Cerebellar Purkinje Cells in Mood Disorders

Prusty, B. K., Gulve, N., Govind, S., Krueger, G. R. F., Feichtinger, J., Larcombe, L., Aspinall, R., Ablashi, D. V. & Toro, C. T., 2018, in : Frontiers in Microbiology . 9, 12 S., 1955.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Human Herpesvirus 6
Purkinje Cells
Mood Disorders
Infection
Major Depressive Disorder

Bioinformatic Analysis of FXR related ChIP-seq data

Panzitt, K., Wagner, M. & Thallinger, G., Aug 2018.

Publikation: KonferenzbeitragPosterForschungBegutachtung

Bioinformatic Analysis of FXR related ChIP-seq data

Panzitt, K., Wagner, M. & Thallinger, G., Sep 2018.

Publikation: KonferenzbeitragPosterForschungBegutachtung

Bioinformatic Analysis of FXR related ChIP-seq data

Panzitt, K., Wagner, M. & Thallinger, G., 27 Nov 2018.

Publikation: KonferenzbeitragPosterForschungBegutachtung

Comparison of tear proteome in allergic rhinoconjunctivitis patients and controls with respect to pollen season

Tomazic, P. V., Liesinger, L., Pucher, B., Thallinger, G. G., Leitner, A., Spoerk, S., Gerstenberger, C., Lang-Loidolt, D. & Birner-Gruenberger, R., Jul 2018, in : Allergy. 73, 7, S. 1541-1543

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Cytoplasmic location of NR4A1 in aggressive lymphomas is associated with a favourable cancer specific survival

Fechter, K., Feichtinger, J., Prochazka, K., Unterluggauer, J. J., Pansy, K., Steinbauer, E., Pichler, M., Haybaeck, J., Prokesch, A., Greinix, H. T., Beham-Schmid, C., Neumeister, P., Thallinger, G. G. & Deutsch, A. J. A., 28 Sep 2018, in : Scientific reports. 8, 1, 14528.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Lymphoma
Survival
Nuclear Receptor Subfamily 4, Group A, Member 1
Neoplasms
Germinal Center

Deletion of Adipose Triglyceride Lipase Links Triacylglycerol Accumulation to a More-Aggressive Phenotype in A549 Lung Carcinoma Cells

Tomin, T., Fritz, K., Gindlhuber, J., Waldherr, L., Pucher, B., Thallinger, G. G., Nomura, D. K., Schittmayer, M. & Birner-Gruenberger, R., 6 Apr 2018, in : Journal of proteome research. 17, 4, S. 1415-1425

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Lipase
Triglycerides
Cells
Carcinoma
Phenotype

Dimension Reduction for the Integrative Analysis of Multilevel Omics Data

Thallinger, G., Pucher, B., Fladischer, N. & Zeleznik, O. A., Mai 2018, Proceedings of SIAM ALA 2018.

Publikation: Beitrag in Buch/Bericht/KonferenzbandBeitrag in einem KonferenzbandForschungBegutachtung

Biological systems
Cells
Proteins

Expression profile of translation initiation factor eIF2B5 in diffuse large B-cell lymphoma and its correlation to clinical outcome

Unterluggauer, J. J., Prochazka, K., Tomazic, P. V., Huber, H. J., Seeboeck, R., Fechter, K., Steinbauer, E., Gruber, V., Feichtinger, J., Pichler, M., Weniger, M. A., Küppers, R., Sill, H., Schicho, R., Neumeister, P., Beham-Schmid, C., Deutsch, A. J. A. & Haybaeck, J., 22 Aug 2018, in : Blood Cancer Journal. 8, 9, 79.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Open Access

Influence of domestic and environmental weathering in the self-cleaning performance and durability of TiO2 photocatalytic coatings

Cedillo-Gonzálaz, E. I., Barbieri, V., Torres-Martínez, L. M., Falcaro, P., Juárez-Ramírez, I., Villanova, L., Montecchi, M. & Pasquali, L., 2018, in : Building and Environment. 132, S. 96-103 8 S.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Rapid prototyping
Visualization
Feedback
Intuition
Processing

Methanol independent induction in Pichia pastoris by simple derepressed overexpression of single transcription factors

Vogl, T., Sturmberger, L., Fauland, P. C., Hyden, P., Fischer, J. E., Schmid, C., Thallinger, G. G., Geier, M. & Glieder, A., 1 Apr 2018, in : Biotechnology and Bioengineering. 115, 4, S. 1037-1050

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Transcription factors
Pichia
Methanol
Transcription Factors
Carbon

Methods for Treating and Detecting Johne's Disease in Cattle

Sensen, C. W., Soh, J., Grabuschnig, S., Villanova, L. & Heidinger, P., 16 Apr 2018, Patent Nr. 62658297

Publikation: SchutzrechtPatentForschung

Methods for Treating and Detecting Sepsis in Humans

Sensen, C. W., Soh, J., Heidinger, P., Grabuschnig, S. & Villanova, L., 30 Jul 2018, Patent Nr. 62711970

Publikation: SchutzrechtPatentForschung

Myristic acid induces proteomic and secretomic changes associated with steatosis, cytoskeleton remodeling, endoplasmic reticulum stress, protein turnover and exosome release in HepG2 cells

Speziali, G., Liesinger, L., Gindlhuber, J., Leopold, C., Pucher, B., Brandi, J., Castagna, A., Tomin, T., Krenn, P., Thallinger, G. G., Olivieri, O., Martinelli, N., Kratky, D., Schittmayer, M., Birner-Gruenberger, R. & Cecconi, D., 15 Jun 2018, in : Journal of proteomics. 181, S. 118-130

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Exosomes
Endoplasmic Reticulum Stress
Hep G2 Cells
Myristic Acid
Heat-Shock Proteins

Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes

Irisarri, I., Singh, P., Koblmüller, S., Torres-Dowdall, J., Henning, F., Franchini, P., Fischer, C., Lemmon, A. R., Lemmon, E. M., Thallinger, G. G., Sturmbauer, C. & Meyer, A., 8 Aug 2018, in : Nature Communications. 9, 1, 3159.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Cichlids
Tanzania
fishes
loci
Lakes

Plasticity of a holobiont: desiccation induces fasting-like metabolism within the lichen microbiota

Cernava, T., Aschenbrenner, I., Soh, J., Sensen, C. W., Grube, M. & Berg, G., 11 Okt 2018, in : The ISME journal. 10 S.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Open Access

The mitochondrial genome of the oribatid mite Paraleius leontonychus: new insights into tRNA evolution and phylogenetic relationships in acariform mites

Schäffer, S., Koblmüller, S., Klymiuk, I. & Thallinger, G. G., 15 Mai 2018, in : Scientific reports. 8, 1, 7558.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Mitochondrial Genome
Mites
Transfer RNA
RNA, Transfer, Gly
RNA, Transfer, Tyr

Translation initiation factors are over-expressed in aggressive lymphomas and influence their clinical course

Unterluggauer, J. J., Prochazka, K., Tomazic, P. V., Huber, H. J., Seeboeck, R., Fechter, K., Steinbauer, E., Gruber, V., Feichtinger, J., Pichler, M., Weniger, M. A., Kuppers, R., Sill, H., Schicho, R., Neumeister, P., Beham-Schmid, C., Deutsch, A. & Haybaeck, J., 2018, in : Oncology Research and Treatment. 41, S. 164 1 S.

Publikation: Beitrag in einer FachzeitschriftAbstractForschung

2017

Circulating Nucleic Acids as Early Diagnostic Markers

Heidinger, P., Bachler, T., Soh, J., Villanova, L., Grabuschnig, S. & Sensen, C. W., 2017.

Publikation: KonferenzbeitragPosterForschung

Circulating Nucleic Acids as Early Diagnostic Markers for Sepsis

Ullrich, E., Heidinger, P., Sensen, C. W. & Krause, R., 2017.

Publikation: KonferenzbeitragPosterForschung

Comprehensive Analysis of Genomic Data for 16 CHO Cell Lines to Investigate the (In)stability of the CHO Genome

Feichtinger, J., Fischer, C., Hernandez, I., Dhiman, H., Borth, N. & Thallinger, G., 2017.

Publikation: KonferenzbeitragPosterForschung

Comprehensive Analysis of Genomic Data for 16 CHO Cell Lines to Investigate the (In)stability of the CHO Genome

Feichtinger, J., Fischer, C., Hernández López, I., Borth, N. & Thallinger, G., 2017.

Publikation: KonferenzbeitragPosterForschung

Critical Issues in Mycobiota Analysis

Halwachs, B., Madhusudhan, N., Krause, R., Nilsson, R. H., Moissl-Eichinger, C., Högenauer, C., Thallinger, G. G. & Gorkiewicz, G., 2017, in : Frontiers in Microbiology . 8, 180.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Microbiota
Computational Biology
Fungal Genes
rRNA Genes
Computer Simulation

Deciphering lipid structures based on platform-independent decision rules

Hartler, J., Triebl, A., Ziegl, A., Trötzmüller, M., Rechberger, G. N., Zeleznik, O. A., Zierler, K. A., Torta, F., Cazenave-Gassiot, A., Wenk, M. R., Fauland, A., Wheelock, C. E., Armando, A. M., Quehenberger, O., Zhang, Q., Wakelam, M. JO., Haemmerle, G., Spener, F., Köfeler, H. C. & Thallinger, G. G., Nov 2017.

Publikation: KonferenzbeitragPosterForschungBegutachtung

Lipids
Mass spectrometers
Complex Mixtures
Fatty Acids
Ions

Deciphering lipid structures based on platform-independent decision rules

Hartler, J., Triebl, A., Ziegl, A., Trötzmüller, M., Rechberger, G. N., Zeleznik, O. A., Zierler, K. A., Torta, F., Cazenave-Gassiot, A., Wenk, M. R., Fauland, A., Wheelock, C. E., Armando, A. M., Quehenberger, O., Zhang, Q., Wakelam, M. JO., Haemmerle, G., Spener, F., Köfeler, H. C. & Thallinger, G. G., 18 Okt 2017.

Publikation: KonferenzbeitragPosterForschung

Lipids
Mass spectrometers
Complex Mixtures
Fatty Acids
Ions

Deciphering lipid structures based on platform-independent decision rules

Hartler, J., Triebl, A., Ziegl, A., Trötzmüller, M., Rechberger, G. N., Zeleznik, O. A., Zierler, K. A., Torta, F., Cazenave-Gassiot, A., Wenk, M. R., Fauland, A., Wheelock, C. E., Armando, A. M., Quehenberger, O., Zhang, Q., Wakelam, M. JO., Haemmerle, G., Spener, F., Köfeler, H. C. & Thallinger, G. G., 1 Dez 2017, in : Nature methods. 14, 12, S. 1171-1174

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Lipids
Mass spectrometry
Software reliability
Tandem Mass Spectrometry
Chromatography

Deciphering lipid structures based on platform-independent decision rules

Hartler, J., Triebl, A., Ziegl, A., Trötzmüller, M., Rechberger, G. N., Zeleznik, O. A., Zierler, K. A., Torta, F., Cazenave-Gassiot, A., Wenk, M. R., Fauland, A., Wheelock, C. E., Armando, A. M., Quehenberger, O., Zhang, Q., Wakelam, M. JO., Haemmerle, G., Spener, F., Köfeler, H. C. & Thallinger, G. G., 13 Sep 2017.

Publikation: KonferenzbeitragPosterForschungBegutachtung

Lipids
Mass spectrometers
Complex Mixtures
Fatty Acids
Ions

Determination of the Isotopic Enrichment of 13C- and 2H-Labeled Tracers of Glucose Using High-Resolution Mass Spectrometry: Application to Dual- and Triple-Tracer Studies

Trötzmüller, M., Triebl, A., Ajsic, A., Hartler, J., Köfeler, H. & Regittnig, W., 21 Nov 2017, in : Analytical Chemistry. 89, 22, S. 12252-12260 9 S.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Mass spectrometry
Glucose
Ions
Blood
Plasmas

Editorial Special Issue on the Occasion of Prof. Dr. Alf Pühlers 75th birthday.

Marques Alves, P., Becker, A., Blöcker, H., Chan, R. L., Chen, G. G-Q., Fussenegger, M., Kondo, A., Kourist, R., Schwab, H., Sensen, C. W., Sensen, M., Seo, J-H. & Srienc, F., 10 Sep 2017, in : Journal of Biotechnology. S. 1 1 S., doi: 10.1016/j.jbiotec.2017.07.013.

Publikation: Beitrag in einer FachzeitschriftEditorialForschung

Erratum: Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily

Lanfranchi, E., Pavkov-Keller, T., Koehler, E-M., Diepold, M., Steiner, K., Darnhofer, B., Hartler, J., Bergh, T. V. D., Joosten, H-J., Gruber-Khadjawi, M., Thallinger, G. G., Birner-Gruenberger, R., Gruber, K., Winkler, M. & Glieder, A., 26 Mai 2017, in : Scientific reports. 7, 46834.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Open Access
mandelonitrile lyase
Enzymes

Four distinct types of E.C. 1.2.1.30 enzymes can catalyze the reduction of carboxylic acids to aldehydes

Stolterfoht, H., Schwendenwein, D., Sensen, C. W., Rudroff, F. & Winkler, M., 2017, in : Journal of Biotechnology. 257, S. 222-232

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Lipidomics: Prospects from a technological perspective

Triebl, A., Hartler, J., Trötzmüller, M. & Köfeler, H. C., Aug 2017, in : Biochimica et Biophysica Acta / Molecular and Cell Biology of Lipids. 1862, 8, S. 740 746 S.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Open Access
Technology
Benchmarking
Workflow
Genomics
Proteomics

Lipidomics by ultrahigh performance liquid chromatography-high resolution mass spectrometry and its application to complex biological samples

Triebl, A., Trötzmüller, M., Hartler, J., Stojakovic, T. & Köfeler, H. C., 15 Mai 2017, in : Journal of chromatography / B. 1053, S. 72-80 9 S.

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

High performance liquid chromatography
Mass spectrometry
Mass Spectrometry
High Pressure Liquid Chromatography
Reverse-Phase Chromatography

MetExtract II: A Software Suite for Stable Isotope-Assisted Untargeted Metabolomics

Bueschl, C., Kluger, B., Neumann, N. K. N., Doppler, M., Maschietto, V., Thallinger, G. G., Meng-Reiterer, J., Krska, R. & Schuhmacher, R., 5 Sep 2017, in : Analytical Chemistry. 89, 17, S. 9518-9526

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Metabolites
Isotopes
Mass spectrometry
Liquid chromatography
Labeling

Methods and Systems for Detecting Bovine Spongiform Encephalopathy in Cattle

Balkema-Buschmann, A., Church, R. B., Gordon, P. M. K., Groschup, M. H., Sensen, C. W., Sensen, M. & Kannanayakal, T., 15 Sep 2017, Patent Nr. 62559476

Publikation: SchutzrechtPatentForschung

Mitochondrial fragmentation in fatty liver

Gindlhuber, J., Darnhofer, B., Pucher, B., Tomin, T., Thallinger, G. & Birner-Gruenberger, R., 6 Sep 2017.

Publikation: KonferenzbeitragPosterForschung

NR4A3 Suppresses Lymphomagenesis through Induction of Proapoptotic Genes

Deutsch, A. J. A., Rinner, B., Pichler, M., Prochazka, K., Pansy, K., Bischof, M., Fechter, K., Hatzl, S., Feichtinger, J., Wenzl, K., Frisch, M-T., Stiegelbauer, V., Prokesch, A., Krogsdam, A., Sill, H., Thallinger, G. G., Greinix, H. T., Wang, C., Beham-Schmid, C. & Neumeister, P., 1 Mai 2017, in : Cancer Research. 77, 9, S. 2375-2386

Publikation: Beitrag in einer FachzeitschriftArtikelForschungBegutachtung

Lymphoma
Genes
Neoplasms
Nuclear Receptor Subfamily 4, Group A, Member 1
Puma